hmgb3b (hmgb3b,LOC107713198,LOC107661738,LOC107581919,LOC108279347,LOC107727275,LOC107743649)


Basic Information

Item Value
gene id hmgb3b
gene name hmgb3b,LOC107713198,LOC107661738,LOC107581919,LOC108279347,LOC107727275,LOC107743649
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14530919 ~ 14534348 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221936.1
TCAGGCAGGTCTCGTAGTCAGCTAGCGCGAGGCTGTGTGGTCTTCTACAGAGAGGAAGCGCGACTCGAGGAGGCCATTAGTGTGACTGAGGAGAAGAGACGACAGGACAAACATTAGCAGAAGGTGTGGTGATAGCTGAGTGGCTTCTTAATCATGGCAAAGGGTGATCCAGGGAAACCCAAGGGCAAGATGTCCGCCTATGCCTATTTTGTGAAGACGTGCCGTGAAGAGCACAACAAGAAGAACCCTGGTGTCACAGTTAACTTCTCAGAATTTTCCAAGAAGTGCTCGGAGAGATGGAAAACTATGTCGCCAAAAGAGAAGACTAAATTTGACGACCTGGCCAAACAGGACAAGGTCCGTTATGATCAGGAGATGTTGAGCTACAATCCAGGCAAGAAAGGTCGGAAGCAGAAGAAGGACCCTAATGCTCCAAGGCGGCCACCGTCTGgattttttctgttctgtgcGGAACAAAGGCCCAACATCAAGGCCCAGAACTCCAGTTTGGGCATTGGAGATGTAGCCAAGAGGCTGGGAGAGATGTGGAACAATCTGTCTGATTCTGAGAAGCAGCCCTTCCTGTCCAAGGCCAACAAACTGAAGGACAAGTATATGAAGgactTGGCCGACTacagaaaaaagggaaaaggaaGCGGAGGGGCATCATCTGCCAAATCCAAGCCGAAGgatgacgacgacgacgatgacgaagatgaagacgaggaggaagaggaagacgacgacgacgacgatgatTAAAGAACTCGTTTCTCCTAATTGGGCAGTAGGTTATTTGTTCGCTGCCAGTTAGTTAAGTCTGGGTCTACGAGGTCTTGATGTCAAGGCTGCTATAAACTGATCACCAGTAGAGATGCCCGATGCATGCAAGCTCTGACTTTAGACAACCAACCTCTCTCAGTGCTGGGTTTGCTGGTGGTCCTGTTACAGCTTGCTATTAAACTGCATCAGCAAAATATTTACACCTTCAACAATAAAACCAAGTGGTAGCAGTGCATActcttttaaaactatttaaggTGGTGTGTTTCTGTACGGCTGTTGACTTTagttctctttttattttctattctcCCAGCTTTCACCATGCACAGTTTGTTCATCTATTTAAGGTTCCGTTCTGTTTGGCCCCATAAGCTTCCTGCAATGTTGAAAGGATGTTTGTGAGTTGtggttatattattatttgtgtaattttgaCTGATTACATTGATAATTTTATGTGTGGAGAGTCTAGAGACATTTTCAGCTTTAACCAGAGGCAAGTGATGAGCTGTTAAGCTGGGAAAAGCTCTTATTTGCACATTTCAGttattcctttttcttttttttatgtctagGTGACACTGtgatttgaaataaacatgGCATTTTTAGATCTCAAATGATTCAAGCGACTTTCtgcaaaatgtttaatgtagTGTAAATACTTGGGTTATTTGTCAATGTTATCAATAAAAGGACAAATGGTga

Function

symbol description
hmgb3b Predicted to enable DNA binding activity, bending. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in chromosome and nucleus. Is expressed in central nervous system; intermediate cell mass of mesoderm; ovary; and pectoral fin bud. Human ortholog(s) of this gene implicated in syndromic microphthalmia 13. Orthologous to human HMGB3 (high mobility group box 3).

NR:

description
PREDICTED: high mobility group protein B3-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11296 HMGB3; high mobility group protein B3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221936.1 True 1494 mRNA 0.44 5 14530919 14534348

Neighbor

gene id symbol gene type direction distance location
LOC122326828 trpc5,LOC107661741,LOC107727288,LOC107663369,LOC107713133,LOC108431879,LOC108261176 coding downstream 8897 14491129 ~ 14522022 (-)
chm chm,LOC107661743,LOC107713202,LOC107731975,LOC107660584,LOC107587276 coding downstream 208762 14279563 ~ 14322157 (-)
LOC122326026 catsperg coding downstream 255972 14266631 ~ 14274947 (-)
rskrb sgk494b,LOC107731954,LOC107661746,LOC107581993,LOC108431327,LOC107587275,LOC107713136 coding downstream 278611 14243151 ~ 14252308 (-)
aldocb aldoc,LOC107581922,LOC107661747,LOC107587231,LOC107704813,LOC107731973,LOC103040804 coding downstream 288294 14233548 ~ 14242625 (-)
mtmr1b mtmr1b,LOC107713197,LOC107727267,LOC107661737,LOC107581988 coding upstream 533 14534881 ~ 14547812 (-)
zgc:110222 zgc:110222,LOC107713196,LOC107661676,LOC107581918 coding upstream 13725 14548073 ~ 14549593 (-)
map4k6 map4k6,LOC107713193,LOC107727265,LOC107661736,LOC107587237,LOC107581987,LOC108431883 coding upstream 15350 14549698 ~ 14569608 (-)
ppp2r2bb ppp2r2bb,LOC107587242,LOC107727286,LOC107661780,LOC107581916,LOC107713191,LOC107662050,LOC108441626,LOC106567445,LOC105902388,LOC107677389,LOC107697624,LOC107750325,LOC107587064,LOC107751325 coding upstream 276562 14810910 ~ 14865402 (-)
bod1 fa44b,LOC107581912,LOC107661728,LOC107662284,LOC107713186,LOC107587245,LOC105011257 coding upstream 397947 14932295 ~ 14935331 (-)
G146622 dach2,dacha,LOC107581921 non-coding downstream 88028 14441999 ~ 14442891 (-)
LOC122326149 NA non-coding downstream 358120 14169728 ~ 14172799 (-)
G146536 NA non-coding downstream 377509 14142468 ~ 14153410 (-)
LOC122326073 NA non-coding upstream 336900 14871248 ~ 14873810 (-)
G146753 NA non-coding upstream 418863 14953211 ~ 15001740 (-)
G146803 NA non-coding upstream 634328 15168676 ~ 15168913 (-)
G146822 NA non-coding upstream 725560 15259908 ~ 15260460 (-)
G146827 LOC107736512 non-coding upstream 734799 15269147 ~ 15269677 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other downstream 267252 14259685 ~ 14263667 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other downstream 303653 14223143 ~ 14227266 (-)
dynll2b dynll2a,LOC107554284 other downstream 308229 14218607 ~ 14222690 (-)
LOC122326208 NA other downstream 391761 14132254 ~ 14139158 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other downstream 663276 13866415 ~ 13867643 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other upstream 378741 14913089 ~ 14920554 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other upstream 1620016 16154364 ~ 16162231 (-)
LOC122326033 NA other upstream 1769396 16303744 ~ 16304724 (-)
G147087 NA other upstream 1804879 16339227 ~ 16339716 (-)
LOC122326634 ppp1r36 other upstream 2092858 16627206 ~ 16633897 (-)

Expression


Co-expression Network