chm (chm,LOC107661743,LOC107713202,LOC107731975,LOC107660584,LOC107587276)


Basic Information

Item Value
gene id chm
gene name chm,LOC107661743,LOC107713202,LOC107731975,LOC107660584,LOC107587276
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14279563 ~ 14322157 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221647.1
CGTGTCACGTGACAGAGTGTAGTTTCAAGATGGCTGCGGAGGATCTGCCGTCTCAATTCGATGTTGTCATTCTCGGAACAGGCCTCACAGAGTCTGTCATTGCGGCGGCCTGCTCCAGAGTCGGACAGAGCGTTCTGCATTTGGACAGgaGAAACTATTATGCGGGAAACTGGGCAAGCTTCACGTTCAATGGCTTGCTGTCATGGATGGAGGAATATAAGaatCAGCAGGAGGTACAGATCGCGGAGTCTGAGCAAGTATGGAAGAACTTGATTGATGAGGGAGAGGATGTGGTGCCTCTCAGCTCTGTGGATTCCTTTATTACCAACTTGGAAGTTTTCTGTTATGCCAGTGAGGAAGAAGAGACAGAAGAGGAAGCAAAGGTCCCTTTAACAAGCTGTCAGTTGGTGGATGCTGAGACTGTATCAGAAGAGACCTCTACAGAGGCTCAAGACACAGTTACAGGTGGCGACGGCACAGCATCCGATGCTAAGACACGGAACGAGGAGCTCGAAGACTCTGAGCCGTCTGACATTTCAGGACCCAGCCAATCACAGGAAGAGAAAGATTCACAGCCGATCAGCCGCCAAGTAGATCCACCTGTAGTGGTGGAAAAGAAGATAACGTATCAAAAGTTGGTAAAAGAGGGACGCAGATTCAACATTGACCTTGTCTCCAAGTTGATGTATTCACGTGGTGCGCTGGTGGATCTGCTCATCAAATCTAATGTGAGCCGTTACGCGGAGTTCAAGAACATCGGACGTATCCTCACCTGCAGAAATGGAAAAGTGGAACAGGTCCCGTGCTCACGGGCAGATGTGTTTGCCAGTAAGCAGCTGACCGTGGTGGAGAAACGCATGCTGATGAAGTTTCttaccttctgtctggactttGAGCAGCACCCAGAGGAGTACCAGGACTATACCGAGAAACCATTTAGAGAGTTCCTGAAGAACAAGAAGCTCACGGAGAACCTGCAAGACTTCGTTCTGCATTCCATCGCTATGGTGACGCAGCAGACCCTTACTGAGGAAGGACTAAAGGCCACGCAACACTTCCTGAGATGCTTGGGACGCTACGGCAACACTCCCTTCCTGTTCCCTCTGTACGGCCTGGGAGAAATCCCACAGTGCTTTTGCAGAATGTGTGCCGTATTTGGAGGAATTTATTGTCTGCGACACTCGGTGCAGTGCCTGGTCGTGGACAAGGCGTCTAACAAAGCTAAAGCTGTGATTGATACACGTGGTCAGAAGATCAGCTGCAGTCATTTTGTGGTTGAAGATTCGTACATCAGAGATGAACAAAGACAGAGCACAGCGTACAGGCAGATATCTCGTGCAGTGCTCATCACAGACAGATCTGTACTACCTTCAGAATCTGATCAGCAGATCTCGTTGGTGACTGTTCCTCCTCTGGAAGCTTCTGCACCAGCTGTGAGGATGGTGGAGCTCTGTTCCTCCTCCATGACCTGCATGCCCGGCACCTATTTGGTCCACTTAACCTGTTCGTCGTCTGGTACGGCCAAGGAGGATCTCGCTCCAGTTGTATCTCAGTTGTTTCACGTTTCCACCATTTCTGGAGAGGAACCTTCAGAAGGCTCAGAGGAGAGAAGCAAGCCGGCGGTGCTGTGGGTCATGTACTTCAACACGAGAGACACATCAGCCCTGGACAGCAGCAGCTACAGCCTGCCGAGCAACGTCCACGTGTGCACCGGTCCCGATGGCAGCCTGGGCAGTGACTACTCCATTAAACTGGCTGAATCTGTGTTTCATCAAATCCTCCCCGACGAAGAGTTCTGTCCGCCCGCTCCCAACCCAGAGGACATCATCTATGACGGAGACGGTCCGCAGGCCGAAGGGCCCGGCTTCGGCGAGAGCGCTAACACAGAAGCAGATAAAAGCCAGACAGAGGAAGAAGGTGGCGGAGATGAGGAGAGCCCGTCGACCGAGAGCTCGGAACCCGCGGAGACGGGCAGCGTTACCCAGCAGGCAACGTCAGACATGACCCTGCCCTCTGAGGAACAACCCCTTTAGAGACGCTTGTTCATTTCTACACGATCACTGAGTATATGGAATCCAAAATACATCACGTTCATCTCCGAAGTTCTCAGTCCTGTTACGTTCATCAAATTTTATATGCctttcttttgcattttcacaCTCGATGCCTGTTTTATTTTGACCGGTTACTGTAAGACGTTTatgtatttgctttttttaaccaaaatgcttttcttttttttaatttcagaatgTATTCACAATTTTGCATGGTTCAAGCAAGGTGCCTATCATATATTCTGGAGTTATTCAAATGACGGAGATTAAATGATTTTGGTCGCACAGacgcttttattttgtcaaatgcTGCTTCTTCCAAccttgtatttgtatttgagaTGTCTGTTTGAACGCTGTCTGTCTTTTCATTTGTACGCTATAATGGTTGctgacattaaaaatgtaattgaagagg

Function

symbol description
chm Enables Rab geranylgeranyltransferase activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; iridophore differentiation; and sensory organ development. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Predicted to be active in cytosol and nucleus. Used to study choroideremia. Human ortholog(s) of this gene implicated in choroideremia. Orthologous to human CHM (CHM Rab escort protein).

NR:

description
rab proteins geranylgeranyltransferase component A 2-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0048798 swim bladder inflation biological_process
GO:0050935 iridophore differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005968 Rab-protein geranylgeranyltransferase complex cellular_component
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221647.1 True 2475 mRNA 0.49 15 14279563 14322157

Neighbor

gene id symbol gene type direction distance location
LOC122326026 catsperg coding downstream 4616 14266631 ~ 14274947 (-)
rskrb sgk494b,LOC107731954,LOC107661746,LOC107581993,LOC108431327,LOC107587275,LOC107713136 coding downstream 27255 14243151 ~ 14252308 (-)
aldocb aldoc,LOC107581922,LOC107661747,LOC107587231,LOC107704813,LOC107731973,LOC103040804 coding downstream 36938 14233548 ~ 14242625 (-)
pigs pigs,LOC107581923,LOC107661745,LOC107704812,LOC107587228 coding downstream 46502 14227762 ~ 14233061 (-)
heatr6 heatr6,LOC107704811,LOC107713138,LOC107731958 coding downstream 64825 14201278 ~ 14214738 (-)
LOC122326828 trpc5,LOC107661741,LOC107727288,LOC107663369,LOC107713133,LOC108431879,LOC108261176 coding upstream 168972 14491129 ~ 14522022 (-)
hmgb3b hmgb3b,LOC107713198,LOC107661738,LOC107581919,LOC108279347,LOC107727275,LOC107743649 coding upstream 208762 14530919 ~ 14534348 (-)
mtmr1b mtmr1b,LOC107713197,LOC107727267,LOC107661737,LOC107581988 coding upstream 212724 14534881 ~ 14547812 (-)
zgc:110222 zgc:110222,LOC107713196,LOC107661676,LOC107581918 coding upstream 225916 14548073 ~ 14549593 (-)
map4k6 map4k6,LOC107713193,LOC107727265,LOC107661736,LOC107587237,LOC107581987,LOC108431883 coding upstream 227541 14549698 ~ 14569608 (-)
LOC122326149 NA non-coding downstream 106764 14169728 ~ 14172799 (-)
G146536 NA non-coding downstream 126153 14142468 ~ 14153410 (-)
LOC122326221 NA non-coding downstream 126175 14146616 ~ 14153388 (-)
LOC122326220 NA non-coding downstream 134231 14142668 ~ 14145332 (-)
G146495 LOC107673793,LOC107693849,LOC107571542,LOC107733475 non-coding downstream 147415 14131607 ~ 14132148 (-)
G146622 dach2,dacha,LOC107581921 non-coding upstream 119842 14441999 ~ 14442891 (-)
LOC122326073 NA non-coding upstream 549091 14871248 ~ 14873810 (-)
G146753 NA non-coding upstream 631054 14953211 ~ 15001740 (-)
G146803 NA non-coding upstream 846519 15168676 ~ 15168913 (-)
G146822 NA non-coding upstream 937751 15259908 ~ 15260460 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other downstream 15896 14259685 ~ 14263667 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other downstream 52297 14223143 ~ 14227266 (-)
dynll2b dynll2a,LOC107554284 other downstream 56873 14218607 ~ 14222690 (-)
LOC122326208 NA other downstream 140405 14132254 ~ 14139158 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other downstream 411920 13866415 ~ 13867643 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other upstream 590932 14913089 ~ 14920554 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other upstream 1832207 16154364 ~ 16162231 (-)
LOC122326033 NA other upstream 1981587 16303744 ~ 16304724 (-)
G147087 NA other upstream 2017070 16339227 ~ 16339716 (-)
LOC122326634 ppp1r36 other upstream 2305049 16627206 ~ 16633897 (-)

Expression


Co-expression Network