LOC122326073


Basic Information

Item Value
gene id LOC122326073
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14871248 ~ 14873810 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU216733
CATAACGTACTATAAAAACAACTCAAGAAAAGTCATTACAGGACATTCCAAGATGGGTTCAAATTCTTTTCTTACGCTTACGGTCAAGTAACGGTAAAGAAACTGGTAAAGTAAATGGTCGGCCTAGTTTCAGTGGAAATGGATTCACTGGttattgttgaaaaataaactggAGAAAGCACAATGCGCATTGGCGAGGAAATGCGTTAAAGCTCGAAAACCAGAATGGCACGAGGCCTGATATGCGGCATTGTTTTGTTACCCTTGGAAACTGGGTCGAAAAAAGGCTTTCGTATGTACGAGGAAAGTGAAAAAAGTTCATCTAATAACAGCCATATGACGGTTAGCGAGGACGAGATCTCGCACTCTTGATTGGCAAACCGAACAGGGTTAGGATTTCCCCGTCTCAACCCACGGACTTTACAGAGCGGAAATGGTGCATTGAATACTTAACCAACGTTTCCTCCTGCTCTGGCGGTTGGGGTTTTCTCAACGCCGACGTCGCTTGCACGTTAGCCTAGTCTGCAATAACAGGCTATCGATGGAAAAACAATGTTATTCGATCAACCTTTATCCGTTAAACGCGATTGCGACACCGTCGGTGGTGTGACGTGGCTCTATTATCACGGGCTGCGAGTTGCGCAATTACGGCTCTCTGTGCACTTTGAGCAAAATGGATAGCGGTGGGACTTTCCCATGACTGTGTGTGTAGTGTGGAACAAACGCCCATGCAAATGAGAGCGCTAATCGATCGGTTTATATAGGGATGCGCTGAGCGAGTAGGCGGCAGAAGAGCTTTCTGCATGCGTCTTATCATTCGCTGCAGGTGCGTGAGAGACATGATTCAGCATCCTCAATCTGGTACTGGTACCGAAATGACTCACCGACAACAGATGATGTGGACCTGTCGAGAAAAGAGGGGAAAACTAAAGAGGGAAGCTGAACCGGACTAGACTACATATCAGTGGGATGCATCTGAGCAAGCTGTACTTTCAAGAAAAACTTTTGCTGGAATCGCgatgaaaaaaagaggaaaccCTAAACAAACACCAGAGACGAAGCGGTTTTGTTACACATTTTACCTAAAAATCTATCCTATTTAAGAAGCGATCTGCTTTTAGGGTGATTTTATTGACACTGTAACATTAAGTTACGTTTAGTTTCTTGCTTAGGCCGAATAAAATGGCCAGCTCGAAGCATTCACAGTTCTTAAGTTTGGATGCTCACGGCATCTGCTCTGAACTACGACCTCAACCAAAACGCCTGCTGCTGGACTGGAAGGTACTGATACGGTTTACTACGTTATCTTCTTTTAGTTTAGAGATGACTGCTGTTTTTAGCCACACTAGTTACTAGTGTATTATTAACCAACTCCCTTTGTGTTAAGCATGTATAAATGATGCTTAAGTAGATTCTGTCAGGTTGTGGATAATTACTGCATAGATTTTGCCTTCATTTGTAAGAACCTGTTTGGTGAAAATACAccattgtgtatttttttactttgttgatgtcagaaaaatagcattaaattgtgtttttcttgaTTCTTCGTACAAACCATTTTGCAGCACAAATGAGTTCTATTAAATATTAGTCTtctactgtaataaaatgttgtgaaaataaaaaaagtatacgAGTAT
>XR_006247420.1
ctttaatttttacaCGTTGGCGCTTTTAAAGGTCATCGTTTATTTATACGCTGTCTTCTAATCATGAGTGGCCTATGACTTCAGGTCATCTGGAGCCTGTGATAATCTGACTCACTTCCTCTGTCATGTGAGGAGAGAGAAAACTCTGTGGCGCAAGATGGGGCCACTGACATGATGTGCAAGCACACTGAAAAATCATGACGGCTGATGTCATAACGTACTATAAAAACAACTCAAGAAAAGTCATTACAGGACATTCCAAGATGGGTTCAAATTCTTTTCTTACGCTTACGGTCAAGTAACGGTAAAGAAACTGGTAAAGTAAATGGTCGGCCTAGTTTCAGTGGAAATGGATTCACTGGttattgttgaaaaataaactggAGAAAGCACAATGCGCATTGGCGAGGAAATGCGTTAAAGCTCGAAAACCAGAATGGCACGAGGCCTGATATGCGGCATTGTTTTGTTACCCTTGGAAACTGGGTCGAAAAAAGGCTTTCGTATGTACGAGGAAAGTGAAAAAAGTTCATCTAATAACAGCCATATGACGGTTAGCGAGGACGAGATCTCGCACTCTTGATTGGCAAACCGAACAGGGTTAGGATTTCCCCGTCTCAACCCACGGACTTTACAGAGCGGAAATGGTGCATTGAATACTTAACCAACGTTTCCTCCTGCTCTGGCGGTTGGGGTTTTCTCAACGCCGACGTCGCTTGCACGTTAGCCTAGTCTGCAATAACAGGCTATCGATGGAAAAACAATGTTATTCGATCAACCTTTATCCGTTAAACGCGATTGCGACACCGTCGGTGGTGTGACGTGGCTCTATTATCACGGGCTGCGAGTTGCGCAATTACGGCTCTCTGTGCACTTTGAGCAAAATGGATAGCGGTGGGACTTTCCCATGACTGTGTGTGTAGTGTGGAACAAACGCCCATGCAAATGAGAGCGCTAATCGATCGGTTTATATAGGGATGCGCTGAGCGAGTAGGCGGCAGAAGAGCTTTCTGCATGCGTCTTATCATTCGCTGCAGGTGCGTGAGAGACATGATTCAGCATCCTCAATCTGGTACTGGTACCGAAATGACTCACCGACAACAGATGATGTGGACCTGTCGAGAAAAGAGGGGAAAACTAAAGAGGGAAGCTGAACCGGACTAGACTACATATCAGTGGGATGCATCTGAGCAAGCTGTACTTTCAAGAAAAACTTTTGCTGGAATCGCgatgaaaaaaagaggaaaccCTAAACAAACACCAGAGACGAAGCGGTTTTGTTACACATTTTACCTAAAAATCTATCCTATTTAAGAAGCGATCTGCTTTTAGGGTGATTTTATTGACACTGTAACATTAAGTTACGTTTAGTTTCTTGCTTAGGCCGAATAAAATGGCCAGCTCGAAGCATTCACAGTCTGCTTGAATGGAGCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGTTGTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGCTCACGGCATCTGCTCTGAACTACGACCTCAACCAAAACGCCTGCTGCTGGACTGGAAGGTACTGATACGGTTTACTACGTTATCTTCTTTTAGTTTAGAGATGACTGCTGTTTTTAGCCACACTAGTTACTAGTGTATTATTAACCAACTCCCTTTGTGTTAAGCATGTATAAATGATGCTTAAGTAGATTCTGTCAGGTTGTGGATAATTACTGCATAGATTTTGCCTTCATTTGTAAGAACCTGTTTGGTGAAAATACAccattgtgtatttttttactttgttgatgtcagaaaaatagcattaaattgtgtttttcttgaTTCTTCGTACAAACCATTTTGCAGCACAAATGAGTTCTATTAAATATTAGTCTtctactgtaataaaatgttgtgaaaataaaaaaagtatacgAGTATGATACACGA

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG:

id description
ko04216 Ferroptosis
ko04217 Necroptosis
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU216733 False 1646 lncRNA 0.42 3 14871257 14873599
XR_006247420.1 True 1943 lncRNA 0.42 2 14871248 14873810

Neighbor

gene id symbol gene type direction distance location
ppp2r2bb ppp2r2bb,LOC107587242,LOC107727286,LOC107661780,LOC107581916,LOC107713191,LOC107662050,LOC108441626,LOC106567445,LOC105902388,LOC107677389,LOC107697624,LOC107750325,LOC107587064,LOC107751325 coding downstream 5846 14810910 ~ 14865402 (-)
map4k6 map4k6,LOC107713193,LOC107727265,LOC107661736,LOC107587237,LOC107581987,LOC108431883 coding downstream 301640 14549698 ~ 14569608 (-)
zgc:110222 zgc:110222,LOC107713196,LOC107661676,LOC107581918 coding downstream 321655 14548073 ~ 14549593 (-)
mtmr1b mtmr1b,LOC107713197,LOC107727267,LOC107661737,LOC107581988 coding downstream 323436 14534881 ~ 14547812 (-)
hmgb3b hmgb3b,LOC107713198,LOC107661738,LOC107581919,LOC108279347,LOC107727275,LOC107743649 coding downstream 336900 14530919 ~ 14534348 (-)
bod1 fa44b,LOC107581912,LOC107661728,LOC107662284,LOC107713186,LOC107587245,LOC105011257 coding upstream 58485 14932295 ~ 14935331 (-)
drd1b drd1b,LOC107587250,LOC107684217,LOC107713182,LOC107727287,LOC107581908,LOC107661723 coding upstream 312822 15186632 ~ 15192148 (-)
pou4f3 pou4f3,LOC107684219,LOC107713180,LOC106603866 coding upstream 362111 15235921 ~ 15237261 (-)
rbm27 rbm27,LOC107713179,LOC107684215 coding upstream 370778 15244588 ~ 15258284 (-)
kctd16b kctd16,kctd16b,LOC107713177,LOC107661798,LOC107727255,LOC107692923 coding upstream 483322 15357132 ~ 15412245 (-)
G146622 dach2,dacha,LOC107581921 non-coding downstream 428357 14441999 ~ 14442891 (-)
LOC122326149 NA non-coding downstream 698449 14169728 ~ 14172799 (-)
G146536 NA non-coding downstream 717838 14142468 ~ 14153410 (-)
LOC122326221 NA non-coding downstream 717860 14146616 ~ 14153388 (-)
LOC122326220 NA non-coding downstream 725916 14142668 ~ 14145332 (-)
G146753 NA non-coding upstream 79401 14953211 ~ 15001740 (-)
G146803 NA non-coding upstream 294866 15168676 ~ 15168913 (-)
G146822 NA non-coding upstream 386098 15259908 ~ 15260460 (-)
G146827 LOC107736512 non-coding upstream 395337 15269147 ~ 15269677 (-)
G146835 NA non-coding upstream 403739 15277549 ~ 15278180 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other downstream 607581 14259685 ~ 14263667 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other downstream 643982 14223143 ~ 14227266 (-)
dynll2b dynll2a,LOC107554284 other downstream 648558 14218607 ~ 14222690 (-)
LOC122326208 NA other downstream 732090 14132254 ~ 14139158 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other downstream 1003605 13866415 ~ 13867643 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other upstream 39279 14913089 ~ 14920554 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other upstream 1280554 16154364 ~ 16162231 (-)
LOC122326033 NA other upstream 1429934 16303744 ~ 16304724 (-)
G147087 NA other upstream 1465417 16339227 ~ 16339716 (-)
LOC122326634 ppp1r36 other upstream 1753396 16627206 ~ 16633897 (-)

Expression


Co-expression Network