rbm27 (rbm27,LOC107713179,LOC107684215)


Basic Information

Item Value
gene id rbm27
gene name rbm27,LOC107713179,LOC107684215
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 15244588 ~ 15258284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221742.1
CATGACGTTGCGCAGAACCTACAGCAGCTCCTCCGACGTGCTAGTGACTACAGAAGGcccagtgtgtgtttttagacgATGCTAGTAGGAGTTACGCATAAACACCCAGCCTTTTATCAGTATTAATCAGTTGCGCGTCAGGATGATTATAGAAAATGTTGACGCTCTGAAATCCTGGCTGGCTAAACTTCTTGAACCCATATGTGATGCTGACCCATCTGCATTGGCAAACTACGTTGTGGCGTTGGTAAAGAAGGACAAACCGGAGAAAGAACTCAGAGCGTTGTGTGCGGATCAGTTGGACGTTTTCCTCCAGAAAGAGACTACAGGCTTTGTCGATAAACTCTTTGAATGTCTAACCACCAAAAATTATTTGGGAAACCCAGCTGCTAAAGAAGAGAGTAAAATCCCAGTGCAGAAGCTTGAGGAGAAGGAAGAgACTAGTCATGTTGAAGATGATAGGGacaacagaagaagaagaagcccATTAAGGAATCGTTCTGATTTCAACGAATCAAGGGCTAGAGATGACCGCAGGAGAGATGACCGTAAGCGGCGGGAACTGGACCGTCATGGAAAAGGCGGGGAATCGTAGCGAGACCGTCACGAGCGGCGAGGAGGAAGCTCACGGGGGAGAAGCTACAGCCGAAGCAGGAGTCGCAGCCGCAGTAGCAGCCGAGGAAAGAGCCGAGAAAGAGAGCACAATCAGAGGAGAGCAGAGCACAGATCCAAATTTGAGCAGGAGCGGAAGGACGCGGAACCTTACAACCCATCCTCTGCCCACATGGGTAACCCGCACCACCAGCAGAGCCATCCACCCCCCCTGCTCCCTCTGCCCCTTCCTCAGCACCAGTTCCCCTCCTCAGGGAGCCCGGCCGTCCCCAACGCCGTAACCGTGGTAGCACCGGCTCATCTGCCCGACAGCACTACTGAGAGCTGGTCCACATACTTCACCAACCACACAGACGGCAAGACGTTCAACAAGAGCAACACGCTTAAACATCGCTGCAGAGACTACGACGAGAAAGGATTTTGCATACGAGGCGATCTCTGTCCTTTCGACCACGGTAATGACCCTCTGATCGTGGATGACGTCACTCTTCCAACCATGATCCCGTTTCCACCCCCACCAGGCCTGCCCCGGATGCCCATGCCGCCCATGACGGAACCTCCTCCCGGCATGCCCTTGCCGCTGCCTCCTCCCCACGGACAGCCTCCGCCTCCAGGCATCTACCCCATGCCAGGACCTCCTCTAATCCCAGCTACTGGGATAGACACTCCACCCCACTCCAGAACCAGCACCTCTTCCCCTTTGGCCCTGCCTGGAGTGGGACCTCCTCCTccgccaccaccaccaccacctccttcctcctcttcctccacctCTGCCTCTCTCCACCCTCAGTACACTCTCTCTGAATACAACTACGACCCTGAGGCCTACAACCCAGAGTCCCCAGGACTGACCGGACCAGCCAGAGCTCAGTACCGCCATTTCATCCCTCGCATCCAGACGCAGAGACCCAATCTCATCGGCCTCACCTCTGGAGACGGACAAAACTTACGAGCGGCTAACATAGTCATTCAGACGGAGCCGTCGGTCACGAGCGTGTCGAGCAGCGAGGCGAGGTATAGCTCTGAGCAGGAGAACAGGAAGAGATGTCTGCCATCTGCAGACGGACCGCAGGCCAAAAAACCCTGGATGGAAAAACCAAATTTCAATAACCAGCATAAACCCACCTTCCCGAAGAAGAACCATTACGTAAACACCAAACTAGAGGTCCGCAAAATCCCCCGGGAGCTCAACAACATCACCAAACTCAATGAGCACTTCAGCAAGTTTGGAACGATAGTCAACATCCAGGTGGTGTTTGGGGGCGACCCGGAGGCAGCGTTGATCCAGTATACAGCTAATGATGAGGCTCGAAGGGCCATCTCCAGCACCGAAGCCGTTCTGAATAACCGCTTCATCAGAGTGTACTGGCATAGAGAGGCCACATCCAACACACAGGAACAGGGACCCGGTCAGAGCACAAATCCTGTACAGCAGCATCCCACAACACACAAGGTCATCAATAAGCAGCACCCAGCAGGGTCTTACGTGCTGAATAAAACCTTCCCTAAACAGCAGACTGCCACAGGAGCCGCAGGCACAACGGGCACCACGGGCGGCACTGAACCTACCAGCCCAAGCCAGGAGCCTTCGGTGGGTTTGACACCACCTTCAAATTTACCGAAGGGTCCGTTCTCACGCACTGTTTTGAAAACTGCATCAAAATCATTGGGAAAAACGGCTAAAGCACTGGAAGCTCAGGAGGTTTTGAAAAAGAAGCAGGAGGCGCTGAAATTGCAGCAAGACATGAGAAAGAAGAAACAAGAAATGCTTGAAAAGCAGATTGAATGTCAGAAGGTGCTGATAAACCGCCTGGAAAAGAACAGAGGGATGAAGCCAGAAGAGAGAGCCAACATAATGAAGACTCTCAAAGAACTCACAGAAAAGATCTCTCAGCTGAAGAATGAGATCAGCCCAACCTCACCATCTACTGCCAACACCACAcaagcaaagtcaaaaacagATGCACAGAAAGAGTTGCTTGATGCGGAGTTGGACTTCCATAAGAAGCTGACGTCGGGAGAAGACACCACAGACCTGAAGAGGAGGTTGGGTCAGTTGCAGGTGGAGGCAACGCGGTTGGGATTGATCCCGGCTGGGCGGGGCAAGCCACCAGCAGCACCAAGTCGAGGCAGAGGGGGCCGGGGGCGGAGCCTGAGGGGGCGTGGTGGAGGCAATCACATGGTAGTAGACCACCGGCCTCGAGCCCTCTCTATCATTGGCTTCACACAGGAAGAGAAGGAGGAGCTCATGCCGCATTTCGTGAAATTTGGCGAGATTGAGGAGCTTCGTGACCATGATGCTACCAGCGTCGTGATGACCTTCAAAACCCGAAGCGAAGCAGAAAACGCTGCAAACCAAGGGGCGAAGTTCAAAGGTCGGATTTTACAGATCTCATGGTACAAACCTAAAACTCCATCCGTGTCCACTGAACCAGAAGAGGAAGAGTCAAAGGAAGAGGTCAACGCCGCAGGAATTCATGTGATGACGGAGCCAGTCAGCCCCTTTCTGCTtccagaggaggaggaagaagacgACGACGAAGACGACGAATACGAGAGCCGCTCATGGAGGCGATGAGGAAGGGGAAACGGCACCACTTTTTTTGTTCAAGGACTCTCATTTTTAGTTTCTGTTGTGAATTCtaatttaagtatatttgaTCGAATAAGAcaaagagtcttttttttttttaagacggTTTTCAGTATTTTGAGAAGCGGCGAAAACGAACCGGCTAATGGCATTCTCCGTACGGGAGAACATAAGAGAATGAGAGACGTCTGTGGGGACTTGCAGTGTTTCTGTCACTCTGAAATCTCTGCATTATATATCAAACTCTCACTTTTGCTGAGAGTGAATGCAAAATGTTTCAACTaggaaacattttgtttcactgTGCATGACCTGATATCAGTAACTCACAACATTTGTGActactgtgatttttattattattattattttcttttaatgccTAAAATAGTTTCACCCGCTTTCCCCGTTCGGTGTATGATTTAACATGAAACTTCATCCGCACTTTGTGCCACTTCGACCTCGTGGTGTAAATTCTCCCAATGGACGCACTCGTTCGGCATCGTTCCCATTAAAGGCATCTCTTTTCTTTAAGAAACGATATGCCCTGATGATGTCAAACGCTTTTGTATCTTCTCTCTAAAGTTtaggcaatatatatatatatacacacatcccCGGGTGGAAAATTTTTCCTCCTCAAGATTAATGTGCCACTTCCTGTAAATATAGACTCGGTATGTGGCATACTTCATTTTGTCCATATTTATTTCACACTTCTATGTGATGTTCCGAAACCAAAAAAGAGCTTTGGATGAGGGTCGGAGGAAACTATTATCGTTAATTGAGGTAACAAGTGAACAGAGGTGTCGTGAATGTATTCAGAATTGATTTACCATTCATTTTACGCCTTATATCGTCAGTGTGTGCAGCTGACGTTTTAtgagatttgtatttttagttgttttggtttttttcgctttgtgtatattttgtaaatggttGCAGTAGTAATGACTGTTCTCTTCATTATTTTAGCCGTTAGAATGAATGAATCGCTGAACGAATCACATTCATGACTCTTAGAGGCTTATTTAAGTGACCGTGTGACTTAAACCGAACATcatgatggtttttttttttttgtaatttttaaacgcGATCTTACGCGATCACACCACACTTtgaagattttttattttttcgtgTTTGACACTCCACTCGTTTCAAAAGCCTGGTCCTCCAGAAAtgggtattaaaaaaaaaaaaaaaaaaaaaaaggaaaaaagtaccGTTTCTGTAACTTAAATATTATCCAATAGCATGCTGGCATCTGTATGCGTGTGTtcatttggggggaaaaaagaaaatatatgaatggatgcatatatatttttttaacaatcataTTTACATACTTTGCTAAAACAATTAAGATATAAGTTTATAGTTCCTTTTAATGAAGGGCCAGTGTAAAACTTTGagactttattatatatatactgttgaTGTGACATTTAATAGCACGTTACTATGCCGTTTGAATCCAAACATTCAGTGAAATACCTGTTTGCCCCATTCTTTCCGATCGATTGTACAATATGTTCTCAATATCCACAATGGTTCAGTTTCTCAGTAACTCATATAAGGTCTGGCAGGTCTTAATGTTGGTTTTGTACATGAGTCTAATAGGAGGACTCGGGACCGCGTGTGAATTTAAAGAATGGATTTTGATCATTTGTACAACAGTTTTAATACACCACATTAGTACAATGTCATACATTTAGCATAAAATAGATTTTGACTTTATTACTGTTTGTAAATTGAAAAATCTATGGATGTATTTTTCAGttctttgtttgtaaaaatggaTTTCTAACAGCTGCATGTTTGCTAATCAATAAAGATATTGGAATGGGGGTGAGCAAGAGGaatacaaaggaaaaaaaaatattacgttCCAATTGGCTTAAAATCAAACGATTTGcaacaaacaaaagagaaaagaaaaagagaggagagagaaaaaaaaaattccatgaTCCATTCCAAGAAATATTCCCCTCTAAAA

Function

symbol description
rbm27 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBM27 (RNA binding motif protein 27).

NR:

description
PREDICTED: RNA-binding protein 27 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13193 RBM27; RNA-binding protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221742.1 True 5219 mRNA 0.46 22 15244588 15258284

Neighbor

gene id symbol gene type direction distance location
pou4f3 pou4f3,LOC107684219,LOC107713180,LOC106603866 coding downstream 7327 15235921 ~ 15237261 (-)
drd1b drd1b,LOC107587250,LOC107684217,LOC107713182,LOC107727287,LOC107581908,LOC107661723 coding downstream 52440 15186632 ~ 15192148 (-)
bod1 fa44b,LOC107581912,LOC107661728,LOC107662284,LOC107713186,LOC107587245,LOC105011257 coding downstream 309257 14932295 ~ 14935331 (-)
ppp2r2bb ppp2r2bb,LOC107587242,LOC107727286,LOC107661780,LOC107581916,LOC107713191,LOC107662050,LOC108441626,LOC106567445,LOC105902388,LOC107677389,LOC107697624,LOC107750325,LOC107587064,LOC107751325 coding downstream 379186 14810910 ~ 14865402 (-)
map4k6 map4k6,LOC107713193,LOC107727265,LOC107661736,LOC107587237,LOC107581987,LOC108431883 coding downstream 674980 14549698 ~ 14569608 (-)
kctd16b kctd16,kctd16b,LOC107713177,LOC107661798,LOC107727255,LOC107692923 coding upstream 98848 15357132 ~ 15412245 (-)
LOC122326537 arhgap26,LOC107713172,LOC107661718,LOC107692919,LOC106567493 coding upstream 249112 15507396 ~ 15573551 (-)
ndfip1l nfip1,ndfip1,ndfip1l,LOC107661716,LOC107581899,LOC106603856,LOC107692929 coding upstream 392019 15650303 ~ 15656889 (-)
mpp1 mpp1,LOC107661714,LOC107581898,LOC107692928,LOC107587257 coding upstream 400179 15658463 ~ 15670000 (-)
gabrb4 gabrb4,LOC107661713,LOC107581896,LOC103032374,LOC106603192,LOC106563397 coding upstream 444896 15703180 ~ 15747754 (-)
G146803 NA non-coding downstream 75675 15168676 ~ 15168913 (-)
G146753 NA non-coding downstream 242848 14953211 ~ 15001740 (-)
LOC122326073 NA non-coding downstream 370778 14871248 ~ 14873810 (-)
G146622 dach2,dacha,LOC107581921 non-coding downstream 801697 14441999 ~ 14442891 (-)
LOC122326149 NA non-coding downstream 1071789 14169728 ~ 14172799 (-)
G146822 NA non-coding upstream 1624 15259908 ~ 15260460 (-)
G146827 LOC107736512 non-coding upstream 10863 15269147 ~ 15269677 (-)
G146835 NA non-coding upstream 19265 15277549 ~ 15278180 (-)
LOC122326900 NA non-coding upstream 25816 15284100 ~ 15289721 (-)
G146862 NA non-coding upstream 166402 15424686 ~ 15426181 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other downstream 324034 14913089 ~ 14920554 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other downstream 980921 14259685 ~ 14263667 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other downstream 1017322 14223143 ~ 14227266 (-)
dynll2b dynll2a,LOC107554284 other downstream 1021898 14218607 ~ 14222690 (-)
LOC122326208 NA other downstream 1105430 14132254 ~ 14139158 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other upstream 896080 16154364 ~ 16162231 (-)
LOC122326033 NA other upstream 1045460 16303744 ~ 16304724 (-)
G147087 NA other upstream 1080943 16339227 ~ 16339716 (-)
LOC122326634 ppp1r36 other upstream 1368922 16627206 ~ 16633897 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other upstream 1460788 16719072 ~ 16730030 (-)

Expression


Co-expression Network