LOC122326138 (tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863)


Basic Information

Item Value
gene id LOC122326138
gene name tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16719072 ~ 16730030 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220829.1
GAGCGCTTGCGTGGACACTTCACGCAGACAATGGCGGGGATGAAGCTCAAGTTTAATGATTAATGCTAacgagtatatatatatatggcagcTCGTTAAGAAGCTGAAGTTCACCGAAGTTTACGATTGTCAGCTTGAAGTTCCGGATCCATCTCGCTCGACTCGTGCGCAGCAAGTCACCATGACTTTGATGAGGCTGTTGACCCGATTGAGTGGATATATGCACTGGAAACAAGGTTTGGAGAGTTTGGGAGGCAGTTCTCAGAGCAAGAGATTACAACACACTGCAGCCCATTCATCTTCATGCAACTATCAGCTGCTGCCTGACTGCCTGGAGCTCAGCTACGGCGGTCTTGTGATGCACTTTGACTACGTCTGGCTGCGAGATCACTGCCGATCTGCCTCATGCTACAACTCGAAAACAAACCAGCGTAACCTGGACACTGCCAGCATCGATCTGAACATCAGGCCTTCAAAGAGCAGAGTGGATGAGAACAACCTCTTCCTCACATGGCCAGACGGTCACATCACACGCTACAGTCTAACATGGCTTGCCCAGAACAGCTACGAGGGCCAGAAGCGAAGTGCCGTTCATCCTCGAATCCTGTGGAGCGCAGATATCTACTCCAGCGCCCGGGTGCCCTCTGCCAGCTGGGACAAGTTCATGAGCTGCGACGAGGAGCTGAAGAACTTCCTCAACAACTTCCTGCTTTACGGAATTGCCTTCGTCGAAGGCGTCCCGCCAACCCTAGAGGCCACCGAAACAGCGACCCAAAGAGTGAGCCTCATCAGGGAGACCATGTACGGGCGGGTGTGGAACTTCACTTCAGATTTCTCCCGTGGAGATACAGCCTACACCAAGCTGGCGCTGGACCGCCACACAGACACGTCATACTTTCAGGAACCCTGCGGCATCCAGGTGTTTCACTGTCTGAGACACGAAGGAACGGGGGGCCGAACTCTGCTGGTGGACGGTTTTCACGCCGCTGACGCTGTCCTCCGCCGATCGCCCCAGAGCTTTGAGCTGCTTTCCCGCGTCCCCATCAAACACGAGTATGTGGAGAACCTGAGTGAGCACCGCAACCACATGATCGGCATCGGCCCCGTGCTCAACGTCTACCCGTGGAACAATGAGGTCTACATGATTCGGTATAATAACTATGACCGTTCTGTTATTAACACAGTCCCTCATGACGTGGTGCGGCGCTGGTACGGAGCTCACAGGCAGCTCTCCGCCGAACTCAGGAGTCCAGACAATGAGCTCTGGGTCAAACTCAAACCAGGCAAGGTCCTGTTCATTGATAACTGGCGTGTTCTGCACGGCCGGGAGTCGTTCACCGGCCTGCGGCAGCTGTGTGGGTGTTATCTGACGCGTGACGATGTGCTGAACACAGCTCGCTCTCTCGGGCTCCAGGCCTGAGCTCAAACATTGACCAAAAACCCCCTGACTTCTCACAGCAGTATTACCTATCAACTCAGCTCTTTGTTTGATTGACTTCATGCTCTTAAAGAAACGAGGTCGTTGTAGAGGATGCATCCATAACGATTTCTTTCCACAGAAAAACAGATACGGTTTCATTTGAAATGCTAGATCTATGTTTTAGAAACGGCCAGGGCATGCCTTGAGGCGAAGAGGCACTTATTTCAAAAAGGTTTACGCTATAATGTATGATTTTAAGGTTTTTACTCACACCGAAAgattaaatatacttttgaaTCTTTGTTTCGGAGAatgtttcacacaaaaaaagagaacgTCCTGATTGTTTACTCTCACCCTCTGGCAACCCATACTTCAGCTGAAGAGAGATTAAAGTGTTGACATGATTTTTCATCATCTAATGCGAGTCAATGGTGCTCATTGTAGACCGTTTTCAACGGACCGGAATCCATATCTAAGCAGATTCAAAGTAATCCACGTGACCCTAGCTGACAAACAGGagtcaataaaaaaagcataatatacattttaattataaatcttTGTTCCAGTTTGTGTGGCATACGTATGTTGTGAAAATCAAGCGTTTTTGTGTCCATTTATTGTTCACAGTGACAACTGCCTCAAATTAAACTGATGCTgggaactgtttctttaaaaagctgGGTATTTCTATGGATTTGTGCCTTAACAGCGATGTAGGAATACATGGTTAGTGGCAGATCTCACGAAGTCCTATTGCATTAATTTTAACGTTTTTTTCTCTCGTTTTTTAATCTGTCGCGTTGTAACATCCTGTATCCTATATAAAATGATCTCAAATGACTGTACGCACAAAAATACCAATGTTACCtctagaaaataaattaatctcCTTGCA
>XM_043220830.1
TGAAGCTCAAGTTTAATGATTAATGCTAacgagtatatatatatatggcagcTCGTTAAGAAGCTGAAGTTCACCGAAGTTTACGATTGTCAGCTTGAAGTTCCGGATCCATCTCGCTCGACTCGTGCGCAGTCACCATGACTTTGATGAGGCTGTTGACCCGATTGAGTGGATATATGCACTGGAAACAAGGTTTGGAGAGTTTGGGAGGCAGTTCTCAGAGCAAGAGATTACAACACACTGCAGCCCATTCATCTTCATGCAACTATCAGCTGCTGCCTGACTGCCTGGAGCTCAGCTACGGCGGTCTTGTGATGCACTTTGACTACGTCTGGCTGCGAGATCACTGCCGATCTGCCTCATGCTACAACTCGAAAACAAACCAGCGTAACCTGGACACTGCCAGCATCGATCTGAACATCAGGCCTTCAAAGAGCAGAGTGGATGAGAACAACCTCTTCCTCACATGGCCAGACGGTCACATCACACGCTACAGTCTAACATGGCTTGCCCAGAACAGCTACGAGGGCCAGAAGCGAAGTGCCGTTCATCCTCGAATCCTGTGGAGCGCAGATATCTACTCCAGCGCCCGGGTGCCCTCTGCCAGCTGGGACAAGTTCATGAGCTGCGACGAGGAGCTGAAGAACTTCCTCAACAACTTCCTGCTTTACGGAATTGCCTTCGTCGAAGGCGTCCCGCCAACCCTAGAGGCCACCGAAACAGCGACCCAAAGAGTGAGCCTCATCAGGGAGACCATGTACGGGCGGGTGTGGAACTTCACTTCAGATTTCTCCCGTGGAGATACAGCCTACACCAAGCTGGCGCTGGACCGCCACACAGACACGTCATACTTTCAGGAACCCTGCGGCATCCAGGTGTTTCACTGTCTGAGACACGAAGGAACGGGGGGCCGAACTCTGCTGGTGGACGGTTTTCACGCCGCTGACGCTGTCCTCCGCCGATCGCCCCAGAGCTTTGAGCTGCTTTCCCGCGTCCCCATCAAACACGAGTATGTGGAGAACCTGAGTGAGCACCGCAACCACATGATCGGCATCGGCCCCGTGCTCAACGTCTACCCGTGGAACAATGAGGTCTACATGATTCGGTATAATAACTATGACCGTTCTGTTATTAACACAGTCCCTCATGACGTGGTGCGGCGCTGGTACGGAGCTCACAGGCAGCTCTCCGCCGAACTCAGGAGTCCAGACAATGAGCTCTGGGTCAAACTCAAACCAGGCAAGGTCCTGTTCATTGATAACTGGCGTGTTCTGCACGGCCGGGAGTCGTTCACCGGCCTGCGGCAGCTGTGTGGGTGTTATCTGACGCGTGACGATGTGCTGAACACAGCTCGCTCTCTCGGGCTCCAGGCCTGAGCTCAAACATTGACCAAAAACCCCCTGACTTCTCACAGCAGTATTACCTATCAACTCAGCTCTTTGTTTGATTGACTTCATGCTCTTAAAGAAACGAGGTCGTTGTAGAGGATGCATCCATAACGATTTCTTTCCACAGAAAAACAGATACGGTTTCATTTGAAATGCTAGATCTATGTTTTAGAAACGGCCAGGGCATGCCTTGAGGCGAAGAGGCACTTATTTCAAAAAGGTTTACGCTATAATGTATGATTTTAAGGTTTTTACTCACACCGAAAgattaaatatacttttgaaTCTTTGTTTCGGAGAatgtttcacacaaaaaaagagaacgTCCTGATTGTTTACTCTCACCCTCTGGCAACCCATACTTCAGCTGAAGAGAGATTAAAGTGTTGACATGATTTTTCATCATCTAATGCGAGTCAATGGTGCTCATTGTAGACCGTTTTCAACGGACCGGAATCCATATCTAAGCAGATTCAAAGTAATCCACGTGACCCTAGCTGACAAACAGGagtcaataaaaaaagcataatatacattttaattataaatcttTGTTCCAGTTTGTGTGGCATACGTATGTTGTGAAAATCAAGCGTTTTTGTGTCCATTTATTGTTCACAGTGACAACTGCCTCAAATTAAACTGATGCTgggaactgtttctttaaaaagctgGGTATTTCTATGGATTTGTGCCTTAACAGCGATGTAGGAATACATGGTTAGTGGCAGATCTCACGAAGTCCTATTGCATTAATTTTAACGTTTTTTTCTCTCGTTTTTTAATCTGTCGCGTTGTAACATCCTGTATCCTATATAAAATGATCTCAAATGACTGTACGCACAAAAATACCAATGTTACCtctagaaaataaattaatctcCTTGCA
>XM_043220831.1
AGACAATGGCGGGGATGAAGCTCAAGTTTAATGATTAATGCTAacgagtatatatatatatggcagcTCGTTAAGAAGCTGAAGTTCACCGAAGTTTACGATTGTCAGCTTGAAGTTCCGGATCCATCTCGCTCGACTCGTCACCATGACTTTGATGAGGCTGTTGACCCGATTGAGTGGATATATGCACTGGAAACAAGGTTTGGAGAGTTTGGGAGGCAGTTCTCAGAGCAAGAGATTACAACACACTGCAGCCCATTCATCTTCATGCAACTATCAGCTGCTGCCTGACTGCCTGGAGCTCAGCTACGGCGGTCTTGTGATGCACTTTGACTACGTCTGGCTGCGAGATCACTGCCGATCTGCCTCATGCTACAACTCGAAAACAAACCAGCGTAACCTGGACACTGCCAGCATCGATCTGAACATCAGGCCTTCAAAGAGCAGAGTGGATGAGAACAACCTCTTCCTCACATGGCCAGACGGTCACATCACACGCTACAGTCTAACATGGCTTGCCCAGAACAGCTACGAGGGCCAGAAGCGAAGTGCCGTTCATCCTCGAATCCTGTGGAGCGCAGATATCTACTCCAGCGCCCGGGTGCCCTCTGCCAGCTGGGACAAGTTCATGAGCTGCGACGAGGAGCTGAAGAACTTCCTCAACAACTTCCTGCTTTACGGAATTGCCTTCGTCGAAGGCGTCCCGCCAACCCTAGAGGCCACCGAAACAGCGACCCAAAGAGTGAGCCTCATCAGGGAGACCATGTACGGGCGGGTGTGGAACTTCACTTCAGATTTCTCCCGTGGAGATACAGCCTACACCAAGCTGGCGCTGGACCGCCACACAGACACGTCATACTTTCAGGAACCCTGCGGCATCCAGGTGTTTCACTGTCTGAGACACGAAGGAACGGGGGGCCGAACTCTGCTGGTGGACGGTTTTCACGCCGCTGACGCTGTCCTCCGCCGATCGCCCCAGAGCTTTGAGCTGCTTTCCCGCGTCCCCATCAAACACGAGTATGTGGAGAACCTGAGTGAGCACCGCAACCACATGATCGGCATCGGCCCCGTGCTCAACGTCTACCCGTGGAACAATGAGGTCTACATGATTCGGTATAATAACTATGACCGTTCTGTTATTAACACAGTCCCTCATGACGTGGTGCGGCGCTGGTACGGAGCTCACAGGCAGCTCTCCGCCGAACTCAGGAGTCCAGACAATGAGCTCTGGGTCAAACTCAAACCAGGCAAGGTCCTGTTCATTGATAACTGGCGTGTTCTGCACGGCCGGGAGTCGTTCACCGGCCTGCGGCAGCTGTGTGGGTGTTATCTGACGCGTGACGATGTGCTGAACACAGCTCGCTCTCTCGGGCTCCAGGCCTGAGCTCAAACATTGACCAAAAACCCCCTGACTTCTCACAGCAGTATTACCTATCAACTCAGCTCTTTGTTTGATTGACTTCATGCTCTTAAAGAAACGAGGTCGTTGTAGAGGATGCATCCATAACGATTTCTTTCCACAGAAAAACAGATACGGTTTCATTTGAAATGCTAGATCTATGTTTTAGAAACGGCCAGGGCATGCCTTGAGGCGAAGAGGCACTTATTTCAAAAAGGTTTACGCTATAATGTATGATTTTAAGGTTTTTACTCACACCGAAAgattaaatatacttttgaaTCTTTGTTTCGGAGAatgtttcacacaaaaaaagagaacgTCCTGATTGTTTACTCTCACCCTCTGGCAACCCATACTTCAGCTGAAGAGAGATTAAAGTGTTGACATGATTTTTCATCATCTAATGCGAGTCAATGGTGCTCATTGTAGACCGTTTTCAACGGACCGGAATCCATATCTAAGCAGATTCAAAGTAATCCACGTGACCCTAGCTGACAAACAGGagtcaataaaaaaagcataatatacattttaattataaatcttTGTTCCAGTTTGTGTGGCATACGTATGTTGTGAAAATCAAGCGTTTTTGTGTCCATTTATTGTTCACAGTGACAACTGCCTCAAATTAAACTGATGCTgggaactgtttctttaaaaagctgGGTATTTCTATGGATTTGTGCCTTAACAGCGATGTAGGAATACATGGTTAGTGGCAGATCTCACGAAGTCCTATTGCATTAATTTTAACGTTTTTTTCTCTCGTTTTTTAATCTGTCGCGTTGTAACATCCTGTATCCTATATAAAATGATCTCAAATGACTGTACGCACAAAAATACCAATGTTACCtctagaaaataaattaatctcCTTGCA
>XR_006247428.1
TGAGCGCTTGCGTGGACACTTCACGCAGACAATGGCGGGGATGAAGCTCAAGTTTAATGATTAATGCTAacgagtatatatatatatggcagcTCGTTAAGAAGCTGAAGTTCACCGAAGTTTACGATTGTCAGCTTGAAGTTCCGGATCCATCTCGCTCGACTCGTGCGCAGCAAGTCACCATGACTTTGATGAGGCTGTTGACCCGATTGAGTGGATATATGCACTGGAAACAAGGTTTGGAGAGTTTGGGAGGCAGTTCTCAGAGCAAGAGATTACAACACACTGCAGCCCATTCATCTTCATGCAACTATCAGCTGCTGCCTGACTGCCTGGAGCTCAGCTACGGCGGTCTTGTGATGCACTTTGACTACGTCTGGCTGCGAGATCACTGCCGATCTGCCTCATGCTACAACTCGAAAACAAACCAGCGTAACCTGGACACTGCCAGCATCGATCTGAACATCAGGCCTTCAAAGAGCAGAGTGGATGAGAACAACCTCTTCCTCACATGGCCAGACGGTCACATCACACGCTACAGTCTAACATGGCTTGCCCAGAACAGCTACGAGGGCCAGAAGCGAAGTGCCGTTCATCCTCGAATCCTGTGGAGCGCAGATATCTACTCCAGCGCCCGGGTGCCCTCTGCCAGCTGGGACAAGTTCATGAGCTGCGACGAGGAGCTGAAGAACTTCCTCAACAACTTCCTGCTTTACGGAATTGCCTTCGTCGAAGGCGTCCCGCCAACCCTAGAGGCCACCGAAACAGCGACCCAAAGAGTGAGCCTCATCAGGGAGACCATGTACGGGCGGGTGTGGAACTTCACTTCAGATTTCTCCCGTGGAGATACAGCCTACACCAAGCTGGCGCTGGACCGCCACACAGACACGTCATACTTTCAGGAACCCTGCGGCATCCAGGTGTTTCACTGTCTGAGACACGAAGGAACGGGGGGCCGAACTCTGCTGGTGGACGGTTTTCACGCCGCTGACGCTGTCCTCCGCCGATCGCCCCAGAGCTTTGAGCTGCTTTCCCGCGTCCCCATCAAACACGAGTATGTGGAGAACCTGAGTGAGCACCGCAACCACATGATCGGCATCGGCCCCGTGCTCAACGTCTACCCGTGGAACAATGAGGTCTACATGATTCGTCCCTCATGACGTGGTGCGGCGCTGGTACGGAGCTCACAGGCAGCTCTCCGCCGAACTCAGGAGTCCAGACAATGAGCTCTGGGTCAAACTCAAACCAGGCAAGGTCCTGTTCATTGATAACTGGC

Function

symbol description
tmlhe Predicted to enable iron ion binding activity and trimethyllysine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human TMLHE (trimethyllysine hydroxylase, epsilon).

NR:

description
PREDICTED: trimethyllysine dioxygenase, mitochondrial-like

GO: NA

KEGG:

id description
K00474 TMLHE; trimethyllysine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220829.1 True 2321 mRNA 0.48 8 16719072 16730029
XM_043220830.1 False 2277 mRNA 0.47 8 16719072 16729989
XM_043220831.1 False 2285 mRNA 0.47 8 16719072 16730004
XR_006247428.1 False 1276 transcript 0.54 8 16720083 16730030

Neighbor

gene id symbol gene type direction distance location
LOC122326401 dkc1,LOC107715851,LOC107742423,LOC107581884,LOC107661706,LOC107562155,LOC107703090 coding downstream 667 16710794 ~ 16718405 (-)
LOC122327019 NA coding downstream 2363 16716499 ~ 16716709 (-)
LOC122327026 NA coding downstream 2837 16716159 ~ 16716235 (-)
LOC122327028 NA coding downstream 4446 16714550 ~ 16714626 (-)
LOC122327018 NA coding downstream 4758 16714176 ~ 16714314 (-)
gpr185a gpr185a,LOC107703086,LOC107661804,LOC107562164,LOC107742463,LOC107715879,LOC107582009 coding upstream 34323 16764353 ~ 16770183 (-)
atg4a atg4a,LOC107581879,LOC107661698,LOC107692955,LOC107562169 coding upstream 66104 16796134 ~ 16804294 (-)
sept8a sept8,sept8a,LOC103023804,LOC107104784,LOC103144874,LOC103369531 coding upstream 122037 16852067 ~ 16869006 (-)
shroom1 LOC107661693,LOC107742431,LOC107581967,LOC107715952 coding upstream 143956 16873986 ~ 16899688 (-)
aff4 aff4,LOC107715968,LOC107692940 coding upstream 170917 16900947 ~ 16933078 (-)
G147129 NA non-coding downstream 9758 16708412 ~ 16709314 (-)
LOC122326402 NA non-coding downstream 14866 16701934 ~ 16704206 (-)
G147140 NA non-coding downstream 17875 16700990 ~ 16701197 (-)
G147138 NA non-coding downstream 20465 16697809 ~ 16698607 (-)
LOC122326074 NA non-coding downstream 164417 16553839 ~ 16554655 (-)
G147217 NA non-coding upstream 17977 16748007 ~ 16752890 (-)
G147223 NA non-coding upstream 33074 16763104 ~ 16763420 (-)
G147239 NA non-coding upstream 87413 16817443 ~ 16817786 (-)
LOC122326728 NA non-coding upstream 104677 16834707 ~ 16835503 (-)
G147252 NA non-coding upstream 139640 16869670 ~ 16872057 (-)
LOC122326634 ppp1r36 other downstream 85175 16627206 ~ 16633897 (-)
G147087 NA other downstream 379356 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 414348 16303744 ~ 16304724 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other downstream 556841 16154364 ~ 16162231 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other downstream 1798518 14913089 ~ 14920554 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other upstream 108308 16838338 ~ 16847221 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 364558 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 1159202 17889232 ~ 17930161 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other upstream 1396199 18126229 ~ 18127999 (-)
G147531 NA other upstream 1440050 18170080 ~ 18170584 (-)

Expression


Co-expression Network