RNA id: XM_043220830.1


Basic Information

Item Value
RNA id XM_043220830.1
length 2277
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC122326138
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16719072 ~ 16730030 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGCTCAAGTTTAATGATTAATGCTAacgagtatatatatatatggcagcTCGTTAAGAAGCTGAAGTTCACCGAAGTTTACGATTGTCAGCTTGAAGTTCCGGATCCATCTCGCTCGACTCGTGCGCAGTCACCATGACTTTGATGAGGCTGTTGACCCGATTGAGTGGATATATGCACTGGAAACAAGGTTTGGAGAGTTTGGGAGGCAGTTCTCAGAGCAAGAGATTACAACACACTGCAGCCCATTCATCTTCATGCAACTATCAGCTGCTGCCTGACTGCCTGGAGCTCAGCTACGGCGGTCTTGTGATGCACTTTGACTACGTCTGGCTGCGAGATCACTGCCGATCTGCCTCATGCTACAACTCGAAAACAAACCAGCGTAACCTGGACACTGCCAGCATCGATCTGAACATCAGGCCTTCAAAGAGCAGAGTGGATGAGAACAACCTCTTCCTCACATGGCCAGACGGTCACATCACACGCTACAGTCTAACATGGCTTGCCCAGAACAGCTACGAGGGCCAGAAGCGAAGTGCCGTTCATCCTCGAATCCTGTGGAGCGCAGATATCTACTCCAGCGCCCGGGTGCCCTCTGCCAGCTGGGACAAGTTCATGAGCTGCGACGAGGAGCTGAAGAACTTCCTCAACAACTTCCTGCTTTACGGAATTGCCTTCGTCGAAGGCGTCCCGCCAACCCTAGAGGCCACCGAAACAGCGACCCAAAGAGTGAGCCTCATCAGGGAGACCATGTACGGGCGGGTGTGGAACTTCACTTCAGATTTCTCCCGTGGAGATACAGCCTACACCAAGCTGGCGCTGGACCGCCACACAGACACGTCATACTTTCAGGAACCCTGCGGCATCCAGGTGTTTCACTGTCTGAGACACGAAGGAACGGGGGGCCGAACTCTGCTGGTGGACGGTTTTCACGCCGCTGACGCTGTCCTCCGCCGATCGCCCCAGAGCTTTGAGCTGCTTTCCCGCGTCCCCATCAAACACGAGTATGTGGAGAACCTGAGTGAGCACCGCAACCACATGATCGGCATCGGCCCCGTGCTCAACGTCTACCCGTGGAACAATGAGGTCTACATGATTCGGTATAATAACTATGACCGTTCTGTTATTAACACAGTCCCTCATGACGTGGTGCGGCGCTGGTACGGAGCTCACAGGCAGCTCTCCGCCGAACTCAGGAGTCCAGACAATGAGCTCTGGGTCAAACTCAAACCAGGCAAGGTCCTGTTCATTGATAACTGGCGTGTTCTGCACGGCCGGGAGTCGTTCACCGGCCTGCGGCAGCTGTGTGGGTGTTATCTGACGCGTGACGATGTGCTGAACACAGCTCGCTCTCTCGGGCTCCAGGCCTGAGCTCAAACATTGACCAAAAACCCCCTGACTTCTCACAGCAGTATTACCTATCAACTCAGCTCTTTGTTTGATTGACTTCATGCTCTTAAAGAAACGAGGTCGTTGTAGAGGATGCATCCATAACGATTTCTTTCCACAGAAAAACAGATACGGTTTCATTTGAAATGCTAGATCTATGTTTTAGAAACGGCCAGGGCATGCCTTGAGGCGAAGAGGCACTTATTTCAAAAAGGTTTACGCTATAATGTATGATTTTAAGGTTTTTACTCACACCGAAAgattaaatatacttttgaaTCTTTGTTTCGGAGAatgtttcacacaaaaaaagagaacgTCCTGATTGTTTACTCTCACCCTCTGGCAACCCATACTTCAGCTGAAGAGAGATTAAAGTGTTGACATGATTTTTCATCATCTAATGCGAGTCAATGGTGCTCATTGTAGACCGTTTTCAACGGACCGGAATCCATATCTAAGCAGATTCAAAGTAATCCACGTGACCCTAGCTGACAAACAGGagtcaataaaaaaagcataatatacattttaattataaatcttTGTTCCAGTTTGTGTGGCATACGTATGTTGTGAAAATCAAGCGTTTTTGTGTCCATTTATTGTTCACAGTGACAACTGCCTCAAATTAAACTGATGCTgggaactgtttctttaaaaagctgGGTATTTCTATGGATTTGTGCCTTAACAGCGATGTAGGAATACATGGTTAGTGGCAGATCTCACGAAGTCCTATTGCATTAATTTTAACGTTTTTTTCTCTCGTTTTTTAATCTGTCGCGTTGTAACATCCTGTATCCTATATAAAATGATCTCAAATGACTGTACGCACAAAAATACCAATGTTACCtctagaaaataaattaatctcCTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217313 lncRNA downstream 9758 16708412 ~ 16709314 (-) True G147129
XR_006247476.1 lncRNA downstream 14866 16703296 ~ 16704206 (-) False LOC122326402
TU217314 lncRNA downstream 15395 16701934 ~ 16703677 (-) True LOC122326402
TU217334 lncRNA downstream 17875 16700990 ~ 16701197 (-) True G147140
TU217332 lncRNA downstream 20465 16697809 ~ 16698607 (-) True G147138
TU217472 lncRNA upstream 18018 16748007 ~ 16752890 (-) True G147217
TU217480 lncRNA upstream 33115 16763104 ~ 16763420 (-) True G147223
TU217511 lncRNA upstream 87454 16817443 ~ 16817786 (-) True G147239
XR_006247504.1 lncRNA upstream 104718 16834707 ~ 16835503 (-) True LOC122326728
XR_006247503.1 lncRNA upstream 104775 16834764 ~ 16835503 (-) False LOC122326728
XM_043221255.1 mRNA downstream 667 16710794 ~ 16718405 (-) True LOC122326401
XM_043221695.1 mRNA downstream 69376 16634014 ~ 16649696 (-) True csf1rb
XM_043221696.1 mRNA downstream 85175 16627206 ~ 16633897 (-) True LOC122326634
XM_043220805.1 mRNA downstream 92805 16622043 ~ 16626267 (-) True sra1
XM_043222034.1 mRNA downstream 171287 16528130 ~ 16547785 (-) True ammecr1
XM_043221873.1 mRNA upstream 34364 16764353 ~ 16770183 (-) True gpr185a
XM_043222098.1 mRNA upstream 66145 16796134 ~ 16804294 (-) True atg4a
XM_043221837.1 mRNA upstream 108349 16838338 ~ 16847221 (-) False frmd7
XM_043221836.1 mRNA upstream 108349 16838338 ~ 16847221 (-) False frmd7
XM_043221838.1 mRNA upstream 108349 16838338 ~ 16847221 (-) False frmd7
XR_006247552.1 other downstream 2363 16716499 ~ 16716709 (-) True LOC122327019
XR_006247559.1 other downstream 2837 16716159 ~ 16716235 (-) True LOC122327026
XR_006247561.1 other downstream 4446 16714550 ~ 16714626 (-) True LOC122327028
XR_006247551.1 other downstream 4758 16714176 ~ 16714314 (-) True LOC122327018
XR_006247539.1 other downstream 5521 16713476 ~ 16713551 (-) True LOC122327005
XR_006247502.1 other upstream 109587 16839576 ~ 16847221 (-) False frmd7
TU217615 other upstream 423593 17153582 ~ 17254372 (-) False fstl4
TU217955 other upstream 1396240 18126229 ~ 18127999 (-) True G147526
TU217960 other upstream 1440091 18170080 ~ 18170584 (-) True G147531
TU218205 other upstream 1728385 18458374 ~ 18468851 (-) True G147673

Expression Profile