RNA id: TU217511



Basic Information


Item Value
RNA id TU217511
length 344
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G147239
representative True

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16817443 ~ 16817786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TATAAGCTAGCATACGCTTTGGATTAatgtatgtaaccctcgttctgATTCGTCTTTGCGCTTcttgtcattttattgcattttttttattaccatgaAAAAAGCTTGAGCACACACACTTCTCCACGCTAATTCCTGTATGTATAGCCTATTTACGGTTGATTTAAAACTTTCCGTACAACTTTCAGAGTCTGCAAAATTTTAAGTATTGTGccaaaatgcatataattgtTTAAGTACTAGGCTGAATATGATAATTcacatgaaaaatgtttacatatagtccacaAGAGAAAATAGtacttgaatttataaaaaattgggccgttcaaaagtttacaccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU217480 lncRNA downstream 54023 16763104 ~ 16763420 (-) True G147223
TU217472 lncRNA downstream 64553 16748007 ~ 16752890 (-) True G147217
TU217313 lncRNA downstream 108129 16708412 ~ 16709314 (-) True G147129
XR_006247476.1 lncRNA downstream 113237 16703296 ~ 16704206 (-) False LOC122326402
TU217314 lncRNA downstream 113766 16701934 ~ 16703677 (-) True LOC122326402
XR_006247504.1 lncRNA upstream 16921 16834707 ~ 16835503 (-) True LOC122326728
XR_006247503.1 lncRNA upstream 16978 16834764 ~ 16835503 (-) False LOC122326728
TU217532 lncRNA upstream 51884 16869670 ~ 16872057 (-) True G147252
TU217552 lncRNA upstream 128827 16946613 ~ 16947391 (-) True G147265
TU217604 lncRNA upstream 240092 17057878 ~ 17060066 (-) True G147295
XM_043222098.1 mRNA downstream 13149 16796134 ~ 16804294 (-) True atg4a
XM_043221873.1 mRNA downstream 47260 16764353 ~ 16770183 (-) True gpr185a
XM_043220829.1 mRNA downstream 87414 16719072 ~ 16730029 (-) True LOC122326138
XM_043220831.1 mRNA downstream 87439 16719072 ~ 16730004 (-) False LOC122326138
XM_043220830.1 mRNA downstream 87454 16719072 ~ 16729989 (-) False LOC122326138
XM_043221837.1 mRNA upstream 20552 16838338 ~ 16847221 (-) False frmd7
XM_043221836.1 mRNA upstream 20552 16838338 ~ 16847221 (-) False frmd7
XM_043221838.1 mRNA upstream 20552 16838338 ~ 16847221 (-) False frmd7
XM_043221835.1 mRNA upstream 20552 16838338 ~ 16847221 (-) True frmd7
XM_043221841.1 mRNA upstream 34281 16852067 ~ 16864141 (-) False sept8a
XR_006247428.1 other downstream 87413 16720083 ~ 16730030 (-) False LOC122326138
XR_006247552.1 other downstream 100734 16716499 ~ 16716709 (-) True LOC122327019
XR_006247559.1 other downstream 101208 16716159 ~ 16716235 (-) True LOC122327026
XR_006247561.1 other downstream 102817 16714550 ~ 16714626 (-) True LOC122327028
XR_006247551.1 other downstream 103129 16714176 ~ 16714314 (-) True LOC122327018
XR_006247502.1 other upstream 21790 16839576 ~ 16847221 (-) False frmd7
TU217615 other upstream 335796 17153582 ~ 17254372 (-) False fstl4
TU217955 other upstream 1308443 18126229 ~ 18127999 (-) True G147526
TU217960 other upstream 1352294 18170080 ~ 18170584 (-) True G147531
TU218205 other upstream 1640588 18458374 ~ 18468851 (-) True G147673

Expression Profile