RNA id: XM_043222098.1


Basic Information

Item Value
RNA id XM_043222098.1
length 1868
RNA type mRNA
GC content 0.51
exon number 13
gene id atg4a
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16796134 ~ 16804294 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATTGGAACGACACAGACATGGACTGCgctacccacaatgcaccgcgATGTATTTGTATCCGATGACGGCCGAGGATGGAGGCAGTTCTAGCCACGTATGAGAATCAAATCAACGTATTCTCTGAGTTTCTAGAAGACCTGCCAGATGTAGACGAGCCAGTATGGATCCTGGGAGCATGTTATGATATTAAAACAAAGAAATCAGAGCTGCTCTCGGACGTGCGTTCACGACTGTGGTTCACGTATAGGAAAAAGTTTTCCCCTATAGGAGGAACGGGCCCTTCATCGGACGCGGGATGGGGCTGCATGCTCCGCTGTGGACAGATGATCCTCGCACAGGCTTTGGTCTGCAGACACCTCGGTCGAGattGGAGATGGGATCCAGAGAAACATCAGCCCAAAGAGTATCATCGCATCTTGCACTGCTTTTTAGACAAGAAGGATAGCTGCTACTCTATTCACCAGATGGCTCAGATGGGCGTTGGAGAGGGCAAGTCTGTTGGAGAATGGTATGGACCGAACACCGTGGCCCAAGTACTCAAGAAGCTTGCTCTGTTTGATGACTGGAATACGCTGGCTGTGTATGTGTCAATGGACAACACGGTTGTCATCGAAGACATCAAGAAACAGTGTAAGCAGCCAGGCCGGGAAAGCAGGACCAGGGCTGGTCCCTGTGAAGTACCAGCTTCAGGCCAGAGCTGCTCGGAGGCTCAGGGAAAGACACTTAACCTTCGATCCCAAAGGCCCCTGGACTGGAGGCCCCTGCTGCTGGTCATTCCTCTTCGAATGGGCATTAACAGCATCAACCCTGTCTACATCCAGGCCTTTAAAGAGTGTTTTAAGATGCCTCAGTCGTGTGGTGTTTTGGGAGGAAAGCCCAACCTGGCCTATTATTTTATTGGATTTATCGATGATGAGTTGATCTATCTGGACCCTCACACCACGCAGCAGGCCGTGGACACCGAGTCGGGCAGCGCTGTGGACGACCAGAGCTATCACTGTCAGAGGACCCCACACCGCATGAAAATCACCAGCCTGGACCCGTCCGTCGCGCTGGGTTTTTTCTGCAAGAGCGAGGAGGACTTCGACAGCTGGTGCGGTCTGGTTCAGCAGGAGCTCCTCAAGAAAGGAAATTTGCGGATGTTCGAGCTGGTGGAGAAGCACCCGTCTCATTGGCCTCCGTTCGTTCCTCCCACCAAACCAGAGGTGCAGACCACAGGAGCAGAGTTCATCGAGTCCCCAGACAAGCTCTTCGAGTCAGAAGAGGAGTTCGAGATCCTAAACGTGTGACCCGTTCACAGACGTCAGCAGCCTTCGTCCGCTCCACGCAGCACAAGTGCCTCCGATCGACGCCGAGCACACGCTTACcgtacgcaaaaaaaaaaacaaccagaaGCCAAGGATCCCGTAGCAGCTGAGTGTGTGACGTTCAGCCTCGTTCAGAGGTCGCGTGAGACAGGATTTGCATGAACTCTTCCGTACTGTTCCACGCTGAGGCGAAGGCTTCGACGAGGACGAGATCTCTACAACCTCAACACACTCTACCTCCTGACCCCAGGAGGTGACGGATCATACGCAGACATCTTTAATTCAGTGTTATTCAAGGATAAACAATGACGACCTTATTGGTTTAAACAAGTGCCTCTCTTTATGACATATTTATGTTTCTGACTGGTAAAGGTGACGTTTCCTTTCCTGACCGGAGCGGGTTAGTTATATCGCCCACCCCTGCACATCTGTACATACGGCTTCAAACGAAGATATTTAAAAGCGTTTAGCACAGACGCTAAATTATGAGCGCCTATCATTTATTGGTGGAAATTGTCactttgtctttgtgtgtttataaaaagaTGACAAATCTGAA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217480 lncRNA downstream 32714 16763104 ~ 16763420 (-) True G147223
TU217472 lncRNA downstream 43244 16748007 ~ 16752890 (-) True G147217
TU217313 lncRNA downstream 86820 16708412 ~ 16709314 (-) True G147129
XR_006247476.1 lncRNA downstream 91928 16703296 ~ 16704206 (-) False LOC122326402
TU217314 lncRNA downstream 92457 16701934 ~ 16703677 (-) True LOC122326402
TU217511 lncRNA upstream 13149 16817443 ~ 16817786 (-) True G147239
XR_006247504.1 lncRNA upstream 30413 16834707 ~ 16835503 (-) True LOC122326728
XR_006247503.1 lncRNA upstream 30470 16834764 ~ 16835503 (-) False LOC122326728
TU217532 lncRNA upstream 65376 16869670 ~ 16872057 (-) True G147252
TU217552 lncRNA upstream 142319 16946613 ~ 16947391 (-) True G147265
XM_043221873.1 mRNA downstream 25951 16764353 ~ 16770183 (-) True gpr185a
XM_043220829.1 mRNA downstream 66105 16719072 ~ 16730029 (-) True LOC122326138
XM_043220831.1 mRNA downstream 66130 16719072 ~ 16730004 (-) False LOC122326138
XM_043220830.1 mRNA downstream 66145 16719072 ~ 16729989 (-) False LOC122326138
XM_043221255.1 mRNA downstream 77729 16710794 ~ 16718405 (-) True LOC122326401
XM_043221837.1 mRNA upstream 34044 16838338 ~ 16847221 (-) False frmd7
XM_043221836.1 mRNA upstream 34044 16838338 ~ 16847221 (-) False frmd7
XM_043221838.1 mRNA upstream 34044 16838338 ~ 16847221 (-) False frmd7
XM_043221835.1 mRNA upstream 34044 16838338 ~ 16847221 (-) True frmd7
XM_043221841.1 mRNA upstream 47773 16852067 ~ 16864141 (-) False sept8a
XR_006247428.1 other downstream 66104 16720083 ~ 16730030 (-) False LOC122326138
XR_006247552.1 other downstream 79425 16716499 ~ 16716709 (-) True LOC122327019
XR_006247559.1 other downstream 79899 16716159 ~ 16716235 (-) True LOC122327026
XR_006247561.1 other downstream 81508 16714550 ~ 16714626 (-) True LOC122327028
XR_006247551.1 other downstream 81820 16714176 ~ 16714314 (-) True LOC122327018
XR_006247502.1 other upstream 35282 16839576 ~ 16847221 (-) False frmd7
TU217615 other upstream 349288 17153582 ~ 17254372 (-) False fstl4
TU217955 other upstream 1321935 18126229 ~ 18127999 (-) True G147526
TU217960 other upstream 1365786 18170080 ~ 18170584 (-) True G147531
TU218205 other upstream 1654080 18458374 ~ 18468851 (-) True G147673

Expression Profile