LOC122326728


Basic Information

Item Value
gene id LOC122326728
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16834707 ~ 16835503 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247503.1
GTGGCTGATCATCCGGTCTGTGACGCCAGGGCAGATGTCTTCAGCCACATGCAGGCTCTTCTCCAGCTGCTCCAGAACTCTCGCCGAGTCGTCGTCACCGTGCTGCGATTTCAGCTACAACACAAAGGCCACGCCAACTCATcTTCCTTAAATAGGACCGTAtgcgaccctggaccacaaaaccagccatggggatcgatttttaaaaaaaaattgGTTTTGtgcttcagggtcacatatgagAAGACAAGCTGCCCTACCTCTGAAAAAACCGGAGCCATGACGGTGGTTAAAC
>XR_006247504.1
GTGGCTGATCATCCGGTCTGTGACGCCAGGGCAGATGTCTTCAGCCACATGCAGGCTCTTCTCCAGCTGCTCCAGAACTCTCGCCGAGTCGTCGTCACCGTGCTGCGATTTCAGCTACAACACAAAGGCCACGCCAACTCATcTTCCTTAAATAGGACCGTAtgcgaccctggaccacaaaaccagccatggggatcgatttttaaaaaaaaattgggtcacatatgagAAGACAAGCTGCCCTACCTCTGAAAAAACCGGAGCCATGACGGTGGTTAAACTGACCGACTTCTTCTGAAGTTCTTCATCCTGAAGGGAGGAGATGGAAAACACAACAC

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247503.1 False 295 lncRNA 0.51 3 16834764 16835503
XR_006247504.1 True 338 lncRNA 0.51 3 16834707 16835503

Neighbor

gene id symbol gene type direction distance location
atg4a atg4a,LOC107581879,LOC107661698,LOC107692955,LOC107562169 coding downstream 30413 16796134 ~ 16804294 (-)
gpr185a gpr185a,LOC107703086,LOC107661804,LOC107562164,LOC107742463,LOC107715879,LOC107582009 coding downstream 64524 16764353 ~ 16770183 (-)
LOC122327019 NA coding downstream 117998 16716499 ~ 16716709 (-)
LOC122327026 NA coding downstream 118472 16716159 ~ 16716235 (-)
LOC122327028 NA coding downstream 120081 16714550 ~ 16714626 (-)
sept8a sept8,sept8a,LOC103023804,LOC107104784,LOC103144874,LOC103369531 coding upstream 16564 16852067 ~ 16869006 (-)
shroom1 LOC107661693,LOC107742431,LOC107581967,LOC107715952 coding upstream 38483 16873986 ~ 16899688 (-)
aff4 aff4,LOC107715968,LOC107692940 coding upstream 65444 16900947 ~ 16933078 (-)
zcchc10 zcchc10,LOC107562177,LOC107692962,LOC107603240,LOC107661792 coding upstream 97709 16933212 ~ 16936901 (-)
c21h5orf15 si:ch73-269m14.2,cunh5orf15,kct2,clg07h5orf15,LOC106603818 coding upstream 479909 17315412 ~ 17320356 (-)
G147239 NA non-coding downstream 16921 16817443 ~ 16817786 (-)
G147223 NA non-coding downstream 71287 16763104 ~ 16763420 (-)
G147217 NA non-coding downstream 81817 16748007 ~ 16752890 (-)
G147129 NA non-coding downstream 125393 16708412 ~ 16709314 (-)
LOC122326402 NA non-coding downstream 130501 16701934 ~ 16704206 (-)
G147252 NA non-coding upstream 34167 16869670 ~ 16872057 (-)
G147265 NA non-coding upstream 111110 16946613 ~ 16947391 (-)
G147295 NA non-coding upstream 222375 17057878 ~ 17060066 (-)
G147413 NA non-coding upstream 496297 17331800 ~ 17333076 (-)
G147414 NA non-coding upstream 506236 17341739 ~ 17342024 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other downstream 104677 16719072 ~ 16730030 (-)
LOC122326634 ppp1r36 other downstream 200810 16627206 ~ 16633897 (-)
G147087 NA other downstream 494991 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 529983 16303744 ~ 16304724 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other downstream 672476 16154364 ~ 16162231 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other upstream 2835 16838338 ~ 16847221 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 259085 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 1053729 17889232 ~ 17930161 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other upstream 1290726 18126229 ~ 18127999 (-)
G147531 NA other upstream 1334577 18170080 ~ 18170584 (-)

Expression


Co-expression Network