zcchc10 (zcchc10,LOC107562177,LOC107692962,LOC107603240,LOC107661792)


Basic Information

Item Value
gene id zcchc10
gene name zcchc10,LOC107562177,LOC107692962,LOC107603240,LOC107661792
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16933212 ~ 16936901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220901.1
TTGAACTaagatataaatgtatattttgcagATAATAATTGTACGACCATAATGactaaataacacaataattaGTTTATAACACAAGACAATATAACTGGAAACCTTTTGTTCTGACTTTCtaaattctgaaagaaaaaaaaaaagattgtgttGGCTAGACTAATTAAACGGAATAAAAACCGTAAAAAAGATCCTCCGAAGCTTTAGATGGCACGCGTTGTTTTTCCAAGCTCGACATTAAACCGGAAGTCAGACTCGCGCGATCGCATTCAAAATGGCGACTCCCATGCACAGATTGATCGCTCGAAGACAAGCGGAGGCGAATAAACAACACGTTCGCTGTCAGAAATGTCTGGAATATGGACACTGGTCCTACGAGTGCACTGGGAAAAGAAAGTACCTTTATAGACCTTCCAGGACAGCTGAGTTGAAAAAGAGACTAAAAGACAAGGAAAACAATCCTTCAGATGATTTGGGagCTGGACTAATACCACGCAGTGAGAagaaaaccaagaaaaaaaggtcctcctccagctccagcagcagcagtagcGGTTCGTCCAGCTCCTCCAATGACTCCTCCTCGGACAGCAGCGACTCCTCGAGCTCCTCGTCCTCGTCTGAAGACAGTAGCAGCGACAGCGACGACACCTCCAgcccttcctcctcctcctcctcgtcttcCTCCAGTTCCGACTCTGATTCGGAGTCCTCGAGCAGTTCCGATCAGGGCCctccaaagaagagaaaaaagaagaaatgaggGTCCAGTTAACGAGAGTGCAATACAGAACTGGAGTCATATACTGAGTGCTGAGAACACACTGCTATTGAATACATGAGGGTAGGGTCTAAAGTCTCGTATGTAAAGAAACTGagaaatatatgtgtatgtggtCATCATCAAACACATCCACGGTTACGTTTGCTTCCGCTATCTCTCTTTGGCAGATTGTAGTAGTTTCTCAAGCAGTGAATTTACTCatcattgatttattcattcattcatttggtttctttttgaccacaaatgcatttttttttttttgctgaggtgtaaaacataattttaagaTGGTCTTATGAAATAAACTGATTTCTTACGGAAAGAAATGTACCTTTTGTGGGATGTGatgtaaatgcaatattaaataatctcTTTAAAATGCA

Function

symbol description
zcchc10 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC10 (zinc finger CCHC-type containing 10).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 10

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220901.1 True 1173 mRNA 0.41 4 16933212 16936901

Neighbor

gene id symbol gene type direction distance location
aff4 aff4,LOC107715968,LOC107692940 coding downstream 134 16900947 ~ 16933078 (-)
shroom1 LOC107661693,LOC107742431,LOC107581967,LOC107715952 coding downstream 33524 16873986 ~ 16899688 (-)
sept8a sept8,sept8a,LOC103023804,LOC107104784,LOC103144874,LOC103369531 coding downstream 64206 16852067 ~ 16869006 (-)
atg4a atg4a,LOC107581879,LOC107661698,LOC107692955,LOC107562169 coding downstream 128918 16796134 ~ 16804294 (-)
gpr185a gpr185a,LOC107703086,LOC107661804,LOC107562164,LOC107742463,LOC107715879,LOC107582009 coding downstream 163029 16764353 ~ 16770183 (-)
c21h5orf15 si:ch73-269m14.2,cunh5orf15,kct2,clg07h5orf15,LOC106603818 coding upstream 378511 17315412 ~ 17320356 (-)
vdac1 vdac1,LOC107557296,LOC107692970,LOC107728276 coding upstream 384719 17321620 ~ 17331144 (-)
skp1 skp1,Skp1,LOC105912995 coding upstream 462955 17399856 ~ 17404439 (-)
ppp2cab ppp2ca,LOC107603261,LOC107692973,LOC107728270,LOC107564119,LOC105021738 coding upstream 468458 17405359 ~ 17412380 (-)
cdkn2aipnl NA coding upstream 480919 17417820 ~ 17420442 (-)
G147252 NA non-coding downstream 61155 16869670 ~ 16872057 (-)
LOC122326728 NA non-coding downstream 97709 16834707 ~ 16835503 (-)
G147239 NA non-coding downstream 115426 16817443 ~ 16817786 (-)
G147223 NA non-coding downstream 169792 16763104 ~ 16763420 (-)
G147217 NA non-coding downstream 180322 16748007 ~ 16752890 (-)
G147265 NA non-coding upstream 9712 16946613 ~ 16947391 (-)
G147295 NA non-coding upstream 120977 17057878 ~ 17060066 (-)
G147413 NA non-coding upstream 394899 17331800 ~ 17333076 (-)
G147414 NA non-coding upstream 404838 17341739 ~ 17342024 (-)
G147417 NA non-coding upstream 422657 17359558 ~ 17360596 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other downstream 85991 16838338 ~ 16847221 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other downstream 203182 16719072 ~ 16730030 (-)
LOC122326634 ppp1r36 other downstream 299315 16627206 ~ 16633897 (-)
G147087 NA other downstream 593496 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 628488 16303744 ~ 16304724 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 157687 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 952331 17889232 ~ 17930161 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other upstream 1189328 18126229 ~ 18127999 (-)
G147531 NA other upstream 1233179 18170080 ~ 18170584 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other upstream 1420667 18357568 ~ 18468851 (-)

Expression


Co-expression Network