atg4a (atg4a,LOC107581879,LOC107661698,LOC107692955,LOC107562169)


Basic Information

Item Value
gene id atg4a
gene name atg4a,LOC107581879,LOC107661698,LOC107692955,LOC107562169
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16796134 ~ 16804294 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222098.1
CAATTGGAACGACACAGACATGGACTGCgctacccacaatgcaccgcgATGTATTTGTATCCGATGACGGCCGAGGATGGAGGCAGTTCTAGCCACGTATGAGAATCAAATCAACGTATTCTCTGAGTTTCTAGAAGACCTGCCAGATGTAGACGAGCCAGTATGGATCCTGGGAGCATGTTATGATATTAAAACAAAGAAATCAGAGCTGCTCTCGGACGTGCGTTCACGACTGTGGTTCACGTATAGGAAAAAGTTTTCCCCTATAGGAGGAACGGGCCCTTCATCGGACGCGGGATGGGGCTGCATGCTCCGCTGTGGACAGATGATCCTCGCACAGGCTTTGGTCTGCAGACACCTCGGTCGAGattGGAGATGGGATCCAGAGAAACATCAGCCCAAAGAGTATCATCGCATCTTGCACTGCTTTTTAGACAAGAAGGATAGCTGCTACTCTATTCACCAGATGGCTCAGATGGGCGTTGGAGAGGGCAAGTCTGTTGGAGAATGGTATGGACCGAACACCGTGGCCCAAGTACTCAAGAAGCTTGCTCTGTTTGATGACTGGAATACGCTGGCTGTGTATGTGTCAATGGACAACACGGTTGTCATCGAAGACATCAAGAAACAGTGTAAGCAGCCAGGCCGGGAAAGCAGGACCAGGGCTGGTCCCTGTGAAGTACCAGCTTCAGGCCAGAGCTGCTCGGAGGCTCAGGGAAAGACACTTAACCTTCGATCCCAAAGGCCCCTGGACTGGAGGCCCCTGCTGCTGGTCATTCCTCTTCGAATGGGCATTAACAGCATCAACCCTGTCTACATCCAGGCCTTTAAAGAGTGTTTTAAGATGCCTCAGTCGTGTGGTGTTTTGGGAGGAAAGCCCAACCTGGCCTATTATTTTATTGGATTTATCGATGATGAGTTGATCTATCTGGACCCTCACACCACGCAGCAGGCCGTGGACACCGAGTCGGGCAGCGCTGTGGACGACCAGAGCTATCACTGTCAGAGGACCCCACACCGCATGAAAATCACCAGCCTGGACCCGTCCGTCGCGCTGGGTTTTTTCTGCAAGAGCGAGGAGGACTTCGACAGCTGGTGCGGTCTGGTTCAGCAGGAGCTCCTCAAGAAAGGAAATTTGCGGATGTTCGAGCTGGTGGAGAAGCACCCGTCTCATTGGCCTCCGTTCGTTCCTCCCACCAAACCAGAGGTGCAGACCACAGGAGCAGAGTTCATCGAGTCCCCAGACAAGCTCTTCGAGTCAGAAGAGGAGTTCGAGATCCTAAACGTGTGACCCGTTCACAGACGTCAGCAGCCTTCGTCCGCTCCACGCAGCACAAGTGCCTCCGATCGACGCCGAGCACACGCTTACcgtacgcaaaaaaaaaaacaaccagaaGCCAAGGATCCCGTAGCAGCTGAGTGTGTGACGTTCAGCCTCGTTCAGAGGTCGCGTGAGACAGGATTTGCATGAACTCTTCCGTACTGTTCCACGCTGAGGCGAAGGCTTCGACGAGGACGAGATCTCTACAACCTCAACACACTCTACCTCCTGACCCCAGGAGGTGACGGATCATACGCAGACATCTTTAATTCAGTGTTATTCAAGGATAAACAATGACGACCTTATTGGTTTAAACAAGTGCCTCTCTTTATGACATATTTATGTTTCTGACTGGTAAAGGTGACGTTTCCTTTCCTGACCGGAGCGGGTTAGTTATATCGCCCACCCCTGCACATCTGTACATACGGCTTCAAACGAAGATATTTAAAAGCGTTTAGCACAGACGCTAAATTATGAGCGCCTATCATTTATTGGTGGAAATTGTCactttgtctttgtgtgtttataaaaagaTGACAAATCTGAA

Function

symbol description
atg4a Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4A (autophagy related 4A cysteine peptidase).

NR:

description
PREDICTED: cysteine protease ATG4A-like isoform X1

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222098.1 True 1868 mRNA 0.51 13 16796134 16804294

Neighbor

gene id symbol gene type direction distance location
gpr185a gpr185a,LOC107703086,LOC107661804,LOC107562164,LOC107742463,LOC107715879,LOC107582009 coding downstream 25951 16764353 ~ 16770183 (-)
LOC122326401 dkc1,LOC107715851,LOC107742423,LOC107581884,LOC107661706,LOC107562155,LOC107703090 coding downstream 77729 16710794 ~ 16718405 (-)
LOC122327019 NA coding downstream 79425 16716499 ~ 16716709 (-)
LOC122327026 NA coding downstream 79899 16716159 ~ 16716235 (-)
LOC122327028 NA coding downstream 81508 16714550 ~ 16714626 (-)
sept8a sept8,sept8a,LOC103023804,LOC107104784,LOC103144874,LOC103369531 coding upstream 47773 16852067 ~ 16869006 (-)
shroom1 LOC107661693,LOC107742431,LOC107581967,LOC107715952 coding upstream 69692 16873986 ~ 16899688 (-)
aff4 aff4,LOC107715968,LOC107692940 coding upstream 96653 16900947 ~ 16933078 (-)
zcchc10 zcchc10,LOC107562177,LOC107692962,LOC107603240,LOC107661792 coding upstream 128918 16933212 ~ 16936901 (-)
c21h5orf15 si:ch73-269m14.2,cunh5orf15,kct2,clg07h5orf15,LOC106603818 coding upstream 511118 17315412 ~ 17320356 (-)
G147223 NA non-coding downstream 32714 16763104 ~ 16763420 (-)
G147217 NA non-coding downstream 43244 16748007 ~ 16752890 (-)
G147129 NA non-coding downstream 86820 16708412 ~ 16709314 (-)
LOC122326402 NA non-coding downstream 91928 16701934 ~ 16704206 (-)
G147140 NA non-coding downstream 94937 16700990 ~ 16701197 (-)
G147239 NA non-coding upstream 13149 16817443 ~ 16817786 (-)
LOC122326728 NA non-coding upstream 30413 16834707 ~ 16835503 (-)
G147252 NA non-coding upstream 65376 16869670 ~ 16872057 (-)
G147265 NA non-coding upstream 142319 16946613 ~ 16947391 (-)
G147295 NA non-coding upstream 253584 17057878 ~ 17060066 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other downstream 66104 16719072 ~ 16730030 (-)
LOC122326634 ppp1r36 other downstream 162237 16627206 ~ 16633897 (-)
G147087 NA other downstream 456418 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 491410 16303744 ~ 16304724 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other downstream 633903 16154364 ~ 16162231 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other upstream 34044 16838338 ~ 16847221 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 290294 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 1084938 17889232 ~ 17930161 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other upstream 1321935 18126229 ~ 18127999 (-)
G147531 NA other upstream 1365786 18170080 ~ 18170584 (-)

Expression


Co-expression Network