LOC122327019


Basic Information

Item Value
gene id LOC122327019
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16716499 ~ 16716709 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247552.1
GTGGCGTGATGAACTTGTTTATCCATTCGCTGAGCGCCGCTGGCTCTGTCCCTCGGCGGCCTTGTGGTCCGTTCTGGGCCTCTGGGTTACAGCCGATCCGGTTCTGTCCGGCCGCTCCAGCGTTCTGTTGGGTCGACCGCGGCGGGCCGGACGCGCTGGTGCCGGGGGAGCGGACCGCTTCAGTCAAAGACGAATAGACGTGTCTGATCAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247552.1 True 211 snoRNA 0.64 1 16716499 16716709

Neighbor

gene id symbol gene type direction distance location
LOC122327026 NA coding downstream 264 16716159 ~ 16716235 (-)
LOC122327028 NA coding downstream 1873 16714550 ~ 16714626 (-)
LOC122327018 NA coding downstream 2185 16714176 ~ 16714314 (-)
LOC122327005 NA coding downstream 2948 16713476 ~ 16713551 (-)
csf1rb LOC107715843,LOC107562165,LOC107703092 coding downstream 66803 16634014 ~ 16649696 (-)
gpr185a gpr185a,LOC107703086,LOC107661804,LOC107562164,LOC107742463,LOC107715879,LOC107582009 coding upstream 47644 16764353 ~ 16770183 (-)
atg4a atg4a,LOC107581879,LOC107661698,LOC107692955,LOC107562169 coding upstream 79425 16796134 ~ 16804294 (-)
sept8a sept8,sept8a,LOC103023804,LOC107104784,LOC103144874,LOC103369531 coding upstream 135358 16852067 ~ 16869006 (-)
shroom1 LOC107661693,LOC107742431,LOC107581967,LOC107715952 coding upstream 157277 16873986 ~ 16899688 (-)
aff4 aff4,LOC107715968,LOC107692940 coding upstream 184238 16900947 ~ 16933078 (-)
G147129 NA non-coding downstream 7185 16708412 ~ 16709314 (-)
LOC122326402 NA non-coding downstream 12293 16701934 ~ 16704206 (-)
G147140 NA non-coding downstream 15302 16700990 ~ 16701197 (-)
G147138 NA non-coding downstream 17892 16697809 ~ 16698607 (-)
LOC122326074 NA non-coding downstream 161844 16553839 ~ 16554655 (-)
G147217 NA non-coding upstream 31298 16748007 ~ 16752890 (-)
G147223 NA non-coding upstream 46395 16763104 ~ 16763420 (-)
G147239 NA non-coding upstream 100734 16817443 ~ 16817786 (-)
LOC122326728 NA non-coding upstream 117998 16834707 ~ 16835503 (-)
G147252 NA non-coding upstream 152961 16869670 ~ 16872057 (-)
LOC122326634 ppp1r36 other downstream 82602 16627206 ~ 16633897 (-)
G147087 NA other downstream 376783 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 411775 16303744 ~ 16304724 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other downstream 554268 16154364 ~ 16162231 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other downstream 1795945 14913089 ~ 14920554 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other upstream 2363 16719072 ~ 16730030 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other upstream 121629 16838338 ~ 16847221 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 377879 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 1172523 17889232 ~ 17930161 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other upstream 1409520 18126229 ~ 18127999 (-)

Expression


Co-expression Network