RNA id: XM_043222034.1


Basic Information

Item Value
RNA id XM_043222034.1
length 6458
RNA type mRNA
GC content 0.45
exon number 6
gene id ammecr1
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16528130 ~ 16547785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCAGGGTCGCAAATGTTCTAGAAACAATACAGGCATTTTGAAGCGGCATTCcgtatttttttactaaaaaaaaaatcccttaatATTTCTAGGGTTTCCGTTGCCGTGGGTGTACGCGTTTAGACAGCGTGAGGGCATTCCTATTGTCTGGTGAGTTTGGAAACgcgaaaaaaaaagagagaatgagtGCAGACTCGACGCCGCTTCGGCTTCGGTGACTAGAACCTGCGCTGCTCGGTCTCGGACGGGACGCTGGCTCACGGTGCTCTCGAACGGCTCCGTTTCTTTCTCCACCGGCTCGAAGACTGCGACCGAGGATGACGAGACCATAAACGGATTTATGCGAATAGCAAAATGCGGGATGTCTGCGTCCGTCGGCGGAGAAACGGCGCCCGCTTTAGCGTAGTTCGTGAATAGGGAGAGATGCGTATGACACGCAGGAATCTGTCGTAAACTACGTCCTGGGCTCTGTACTCCGGCGTGAAAGTAGAGAATACTAGTCCGAGCGCTTCGGATGAACGCATAGGATATTTTCTCCACCGCGACCGAGCTAATGTTAGCAGCCGCGAGCGCGGCGCGCAGAGAGACCGGGGGAATCCGCGTCTGACCGGAGGCCGTGCTATCACGCCGCGCCGAAATGCGCCCGAATAATCGGATGACAGCGCTCCGATCCGTCGAGGGAAAACTTTTGGGCTCGGTTTACGCGGCGGCGGGCTTGCATTAAAGCGGGTCGTGTGGCTATGGTGCTATCACGCACGCAGCCGAACCGCATCGTCGACTGAAAGCCGCTCAGACTGCGTCGCTTCTCGGGCGAGGCGTGTATGGGTCCCCGCTCCCTCGGAGGGAGACCTGACTCTGCAGGCCATATATTTGCCTAGCCTGAGTGTCGTTTCATGTATGGATGGACGCGTGCATGCTTTGACAGAACCCTGCGTGCATCGTTGCAGTTGGCACAGCGCATCCCAAGGAGGGGCTGTTACTCTACTAGCAAAAGCCCGCACATCGGGTCCGTCGAAGCCTTTAATTTGTCTCCCTAAGAACATTACGTAAGGCTGCAGCGTACGCTACGTCTTTTCGGAGGCAAACTATCGGGTGACATTGCAGTCTCTCCCCTCGGAGAGATATAACGTAAGCTCCTCTCGGTTATTACGTCCGTCAAAAGCGAGGGAAGGTGGAGCATCGTCCGTCGTACGTGCTGACGCAGTGGGATTTCTACGTGTGGTCTGCGTTTCGGCCCGCCCTTCCCGCGGTGACGGTGATGGGTCGGAAGCGGTGTGTCGGTGCAGATTGTTCGAAGATGGCGGCAGGGTGCTGCGGGGTGAAGAAGCAGAAGTTGTCGGGATCCCCCGGGGCTGGGGGTCCCGGCGGGGCTGGCAGCGGAGTAGCCGGGACCGGACATTGTGGATCGGAATTGGGGATCGGGTCGTCCTCGACTGTTGTGGCAGGAAACGTGAATCGGGTGAACGGCCTGGGGGGTCCGGggggtagtagtagtagcagcgGCAGCAGCGGCAGCAACAACACCAATGCTCTGTCCCCAACTCCAGGAGGCTACAACTCCACCGGCCTCTCCCCGACTCTCAGCCCCGGCCCCGGCTCCGGAGCCAGGAAAATGGTCGTTTCGGCGGAGATGTGTTGCTTTTGCTTCGACGTGCTTTATTGCCATCTATACGGATACCAGCCTCCTCGAACACCCAGGTTTACAAACGACCCCTACCCACTGTTTGTCACTTGGAAAATCGGCCGGGACAAGCGGTTAAGGGGTTGTATAGGTACATTTTCTGCCATGAACCTGCACTCAGGACTCAGGGAGTACACCCTTACCAGTGCCCTTAAAGACAGTCGCTTTCCCCCCATGACGAGGGACGAGCTGCCGCGCCTCTTCTGCTCAGTGTCTCTGCTCACCAACTTTGAGGATGTTGGTGATTACCTAGACTGGGAGGTGGGTGTTCACGGCATTAGGAtagaattttttaatgaaaaaggaTCAAAGCGCACCGCCACCTACCTGCCAGAGGTTGCGAAGGAGCAAGGATGGGACCACATTCAGACCATAGATTCCTTACTTCGAAAGGGAGGTTACAAAGCTCCCATCACAAATGACTTCAGGAAGACTATAAAATTGACCAGGTACCGTAGTGAAAAGATGACCATGAGCTACGCAGAATACATCGCCCACCGCCAGCATCATCACTACCAGAATGGCATCGGGCACCCTCTCCCTCCGTACAACCATTATTCCTGACAGCGAGCCGCATGACCAGTCACTGGACCTCTCGGCGGACATCTTCCCGGGAGAGCCCACCCCCTCGTGGTCTAGCTATCTGTACTACTGTACCATTTTATGATGATAGTTTCCGTTGCCATGTCGACAGTCCGTTGGAGGCATGGCAGCGGGTGGCAAATAAGCATTAGGTGATTATAAAGCgaaaaaatacaattcatttattttgtcatttttattctttgtattaatttagtttttgcagcatatatatatatatatatatatatatatatatatatatataaatatatatcaaacccttccctttttttaagcaaataaacaagtactaatttttattttatttaaattttttttttatttcaacaaatttCCTAAAATCAGGTTTCTCAGTCTGTGGATGGAAATAAGTCATATTAAACGATGGGCTAGATGCTTTTTACGTACGCTCGGCTTTAGTGACTCGCTCGAtttcgttgttgtttttcctcttttatcGTTTCTTATTAGTTTGACTTTTATATCATATAGGCAAGCACGGCGTTTAAGGGATTCTCTTTCCTCTCTGCGCGCTTCCTCTGATCGTTTGCTTTCGTGAGTGGTGGTTTAGTTTTATCGTGAGCGTTGTTGTGGGGTTGTAGGGACGTGCGGCGTGGCCGAGTCGAAACTGTTTGCGTTTTCCTCAGATTATCGAAACCCGCTAtcttaaattttagtttttgggtACCTAATATTTTCCCCTTAGTGCAGAAGCCTGTTGCTCTTAGCATTACTGGAGttgattttctttaattttatttacttgctACAGTTAGGCCCTTTTTCGCGTAGCGTTGGTTCATGCGTATTAATCCACGTGCGTCGTCTTTCGTTGATGTGTCGTGTTGGTGTCGTTTTTTTGAGGTTGACGGTGTGAGTCTGCGCTAAGAGTGTCGCTGAACGAAGGCTTTTCTAGTCGGTTGAGCTCGCGAACGAATTCGTCCGTTTCGTATCGCTCCTATTTGATCACACAGAGAAAGGACAGGGACAAGCTAAGAAAAAGCCatactcttattttttttaacacatgctGTGGCGGGGTGGTCGCTCTAAAtggctgtttttaattaatttttctccTGGTCTGTTTACCTGGCACGGAAACCTTCACTCTCAGGAGGATGCTTCAGAAAGCTCTTGCGTTTAGTTTTTAACGATCCGGTCTTACGGATGAATATGTCCATTTCTGTCTCGCATGGCGGCAATGTTTACACCTCCATTCAAACGGCTTTAATTGAGAAGATGACTTGAGTCAAGCTGCTCTTCGCATCTGGCGGTGAAGCTTGTTCGGATGATGACGACgacgttatttttttttgttatggttGGAAGTGTCTTTTCTCACGGACGGTTTGTTAGACCCATTTTTAAACTCTCGCTCCGAAAGGCATCAGTGTTATTTTGATCAGGTGTAGACTGAATATCACGTGTCATATTGTCTGTAGAAGCAGCGGACTCGCGTTCGAAAGGAAAATCGAGCACGAtttctgcctttttgttttcatatgcaAAACGTTAAGGGCTTTTGGGGTTCCATCCACAGTCGTTACCCAGCTCACTAAAAccgaaaaaaaaacctgatttcAGTTGTTTTGCCTTAAAATGGTTATGACGTGGACCAGCAAATGTTTCCCGGAGCGTTCATCTGCTTTGAGACcagttcttttttgttttaactgttaAGTCAAGTGTTTATTACTGCCCAGTCAAGACTGTTTGTCCACCTGTTAGACCCCACCTACCAGGAAGTAGGTCACGGTTAGGAAAAGCGACACATTTGTTGTCTCTTCAATCTTAAACGAccctttaaatcaaatttttggCCTCGTTTTTTAAGCCcgggttttgtttttctggttgAACGTTCTTGGGCCTCGTTTGTCggtccatttaaaaaaaaaaaaacagcacaaaccGAAATTTTTTCTGCTGCAAAACCAACTCTTTGCATTTGAAATGACATTGGCAATACATTTGTTGCATGAATAGGCCTCCTGTTAAACATGGCATGCTTGTTTCACTGCTATATAGAtacgagaagaaaaaaagactatatAAAATGGTGCTATCGGACCTCGCGTCGGGGGTGGTCGCAGTAAACGTGACCGGTCATGCGGACTCATCGATCATATCAGACTTTATTATTATCCTCAATATATGCAGATCTGttttacaggtgtttttttcCTACCAGTGTAACAAACTCTCCTGCAGGTTTGAAAGGACAAGTAGTGACGAGTCTAACCCCATCTTTCCCTCATGGCCTGGGGGATTTGGGCATATGCTTAACATCTCATCTGTTGCAGACGTGCACATTTACGCAATACCCCGGAGTCTCGCTCTTTGTTTCCGTTGTCGCACGCCGTGGATGTTTCACGTTCATGCACATTGCCATTTCGAACGCCGTCGCCTGAACACGGGCCAAAACTACAGCGATAACGACGTGCTGAGTTTACTTCGCTCGCGATGTTTGTTCAAATATCATCGGTTCGTTCGGTCGCGAGCGGCGAAAGACGCGTTTAGTTTGGTTCAgtacgtttttctttttttttcttttttttttctgtctgcgAAATGGATCAAAGTATTTTCACGATTCCTGGAGTGGTTCGAACATGCACTTTGAGGACATTCGCGATCCCAGGCGCGTCTGAACACCGTCGAAACTCTCAGTACCCGACCTGCGTTCACGTTGCTCGAAGACGAGTTCGAAAACCATTTTCACGCTATACGTCGTCTTTTGAGTTTCTGTGATTTCTACCGACACAACTGGGATTAGTGTTTGGTGCGTGTATAGCAAATGCTCGTTTAGGCATAAATGTTGGGTTGTAACACCTACGGACGAGCTCCGCGCTCGCCGTCAAACCCATCGTCGTTTGGCTCATGTTACCTTTGCGTGTTCAACCTGAACCAAAGATGCCTCCAGCCATGTCCAAATGCTGCTCTACAGACCTGCCTTCCTGTCCTTCCAAAAACCTTCCCTGCAAGAGAAATGTCTTCtgtttgtatgttatttttttttttttgtacaatttctaatattgttttaggtttttagcTACCTAAGTTCAATGAATTTTCATTGTAGCTGTCTTTGAGACCTTGCACGGTGTCAATGACCGTAATACTAGgttgcacttttttattttgttttcatcattgttgttattattatatatttttgtaaagaaagaaaacccCATAGCGTGCCTCTTAGATTTATGggtttcttaatgtttttttgtttgttttttttttttctaagaccAGCAGTTATACTTTATACAAAAGATGAGTTAACccttatttttaaatgccatttaaagaaagaaagaaaaaaaaaaagcctcttttCTTTACTCTGGACCCAGTAGCTGCACTGGCATACAATCGCACTGATAGAtatgggggggaaaaaagtataactaataataatgatgatgatgataaaaaaaataataatgtaagaaCTACAAtaaatttgtttgaaaatgttttgtaaaaaaaaaaatccaaaaaaaaaaggaaaaaagaaatgtaaaaaaagtaaacacaatGACTGTTTTTGTATATCGagttaattctttaaaaaaaaaaatattttggacctagtttctaaattattttagtggTTTTCTATGTTCTGGAACTTTGAGAAGATGAGTTTTGAACGCGCCCTTCGATGACTGACAGCTTGCGGTGTTGTCACGGCGGCCGTCGGGGTGCCTGGTGTAGCCCCGCGTGCCCGACActttttcctttctgtttttcagtttgaattctttcttccttttcagaACTTAAAAATTGTTAAAGTAACGACTTGgcgaaaacaataaaaaaaaaaaaatatctagagAAACGACTCCCCTGTAGAACTAGATCCTTTACCCCCCACTGAATTGCTGTTAGTGTGATGAGACTTGAAATGggcatttattatgaatatggTAGTACGgctccaaaaaaaacacacaaaaaaaaaaagacaaaaatgacaaaatccacacaaaaaaaaataatgtgttggGGTGGGAGGAGGGGGTGGCAAATAGACGGGTTATATGTGGGTATGTGAGCTATGGCTGTGGCAATgataatgtagttttaaaacattattgttattaccttttaaatcatttatccaataaaaataaattctgagaGAA

Function

GO: NA

KEGG:

id description
K24611 AMMECR1, AMMECR1L; AMME syndrome candidate gene 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217253 lncRNA downstream 18883 16508381 ~ 16509247 (-) True G147096
TU217247 lncRNA downstream 80057 16376051 ~ 16448073 (-) True G147090
TU217236 lncRNA downstream 291713 16231707 ~ 16236417 (-) True G147081
TU217235 lncRNA downstream 300123 16227714 ~ 16228007 (-) True G147080
TU217091 lncRNA downstream 381134 16146598 ~ 16146996 (-) True G146997
XR_006247421.1 lncRNA upstream 6054 16553839 ~ 16554655 (-) True LOC122326074
TU217332 lncRNA upstream 150024 16697809 ~ 16698607 (-) True G147138
TU217334 lncRNA upstream 153205 16700990 ~ 16701197 (-) True G147140
TU217314 lncRNA upstream 154149 16701934 ~ 16703677 (-) True LOC122326402
XR_006247476.1 lncRNA upstream 155511 16703296 ~ 16704206 (-) False LOC122326402
XM_043222085.1 mRNA downstream 22458 16502695 ~ 16505672 (-) True fundc2
XM_043220722.1 mRNA downstream 27215 16498524 ~ 16500915 (-) True brcc3
XM_043220706.1 mRNA downstream 223406 16303744 ~ 16304724 (-) True LOC122326033
XM_043222084.1 mRNA downstream 780376 15703180 ~ 15747754 (-) True gabrb4
XM_043221414.1 mRNA downstream 858130 15658463 ~ 15670000 (-) True mpp1
XM_043220805.1 mRNA upstream 74258 16622043 ~ 16626267 (-) True sra1
XM_043221696.1 mRNA upstream 79421 16627206 ~ 16633897 (-) True LOC122326634
XM_043221695.1 mRNA upstream 86229 16634014 ~ 16649696 (-) True csf1rb
XM_043221255.1 mRNA upstream 163009 16710794 ~ 16718405 (-) True LOC122326401
XM_043220829.1 mRNA upstream 171287 16719072 ~ 16730029 (-) True LOC122326138
TU217243 other downstream 188414 16339227 ~ 16339716 (-) True G147087
TU217241 other downstream 223419 16303857 ~ 16304711 (-) False LOC122326033
TU217095 other downstream 365899 16154364 ~ 16162231 (-) False G146999
TU217094 other downstream 367135 16154364 ~ 16160995 (-) True G146999
TU216757 other downstream 1607732 14915978 ~ 14920398 (-) False stc2b
TU217309 other upstream 83901 16631686 ~ 16633698 (-) False LOC122326634
XR_006247539.1 other upstream 165691 16713476 ~ 16713551 (-) True LOC122327005
XR_006247551.1 other upstream 166391 16714176 ~ 16714314 (-) True LOC122327018
XR_006247561.1 other upstream 166765 16714550 ~ 16714626 (-) True LOC122327028
XR_006247559.1 other upstream 168374 16716159 ~ 16716235 (-) True LOC122327026

Expression Profile