RNA id: XM_043220722.1


Basic Information

Item Value
RNA id XM_043220722.1
length 1226
RNA type mRNA
GC content 0.46
exon number 8
gene id brcc3
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16498524 ~ 16500915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTGTTTCCCGTCGGAAGGAATTGAATGTAGCGCGTGCGCTCCGCCGATGGGGAAGTGCTGCACAgcgataaacaaacaaacaaatcagaaaaaCGGACGCACTGTTAACCCGTGCTTCATATAATGGCCGTGAGCGCTGTACATTTAGAGTCGGACGCGTTTCTAGTCTGTATGAATCACGCTCTGAGCACGGAGAAAGAGGAAGTAATGGGGCTCTGCATCGGCGAGGTGGACACAAACCGCATCGTGCACATTCATTCTGTCATAATTCTGCGTCGATCAGACAAGAGGAAAGACAGAGTGGAGATTTCACCGGAGCAGCTGTCAGCAGCGTCCACCGAAGCCGAGAGGTTGGCTGAGATGACGGGACGTCCCATGAGGGTCGTGGGCTGGTACCACTCTCATCCACACATCACCGTGTGGCCGTCACATGTCGATGTTAGGACTCAAGCAATGTATCAGATGATGGACCAGGGTTTTGTGGGACTCATCTTCTCCTGCTTCATAgaagataaaaacacaaagACCGGTAGAGTCCTGTACACCTGTTTCCAGTCAGTCCAAGCCCAGAAAGGCTCAGAGTATGAGCGGATTGAGATCCCCATCCACGTGGTTCCACACGAAGCCATCGGGAAGGTGTGCCTGGAGTCTGCCGTGGAGCTTCCCAGAATCCTCTGTCAAGAAGAACAGGATACATACCGAAGGATTCACAGcttaacTCACCTGGATCCGATCACGAAGATACACAACGGATCAGTGTTCACTAAGAACCTGTGCAGTCAGATGTCGGCCATCAGCGGCCCGCTGCTTCAGTGGCTGGAAGATCGGCTGgaacagaacaaacaaaccATCATCAAACtccagaaagagaaagagcagcTGACACAAGAACTGGCTTCATTATAAGGAGAATcattctttgttgtttttttgcactgaaagCACTGTTTTTTTGCCCTACtgccacattttttatatatatatatatatatatatatatatatatacacacacacacacacaagctggtATCTCTGTAGTAGTGATATGTATACTCACTGATTGTTCTTAAAAAGgttattgattgttttttttcccttctatTATGGATTTGATTTTGATGACATGAATTCCCGACGCTATTTTGCCATCAGCTGTAAATCTCTGAATGTACATACACGCCGATTTAAAACGACggcttaaaataaaagtctctcaACGTCA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0070537 histone H2A K63-linked deubiquitination biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0006508 proteolysis biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K11864 BRCC3, BRCC36; BRCA1/BRCA2-containing complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217247 lncRNA downstream 50451 16376051 ~ 16448073 (-) True G147090
TU217236 lncRNA downstream 262107 16231707 ~ 16236417 (-) True G147081
TU217235 lncRNA downstream 270517 16227714 ~ 16228007 (-) True G147080
TU217091 lncRNA downstream 351528 16146598 ~ 16146996 (-) True G146997
TU217058 lncRNA downstream 611032 15841548 ~ 15887492 (-) True G146982
TU217253 lncRNA upstream 7466 16508381 ~ 16509247 (-) True G147096
XR_006247421.1 lncRNA upstream 52924 16553839 ~ 16554655 (-) True LOC122326074
TU217332 lncRNA upstream 196894 16697809 ~ 16698607 (-) True G147138
TU217334 lncRNA upstream 200075 16700990 ~ 16701197 (-) True G147140
TU217314 lncRNA upstream 201019 16701934 ~ 16703677 (-) True LOC122326402
XM_043220706.1 mRNA downstream 193800 16303744 ~ 16304724 (-) True LOC122326033
XM_043222084.1 mRNA downstream 750770 15703180 ~ 15747754 (-) True gabrb4
XM_043221414.1 mRNA downstream 828524 15658463 ~ 15670000 (-) True mpp1
XM_043221744.1 mRNA downstream 841635 15650303 ~ 15656889 (-) True ndfip1l
XM_043221745.1 mRNA downstream 841637 15650303 ~ 15656887 (-) False ndfip1l
XM_043222085.1 mRNA upstream 1780 16502695 ~ 16505672 (-) True fundc2
XM_043222034.1 mRNA upstream 27215 16528130 ~ 16547785 (-) True ammecr1
XM_043220805.1 mRNA upstream 121128 16622043 ~ 16626267 (-) True sra1
XM_043221696.1 mRNA upstream 126291 16627206 ~ 16633897 (-) True LOC122326634
XM_043221695.1 mRNA upstream 133099 16634014 ~ 16649696 (-) True csf1rb
TU217243 other downstream 158808 16339227 ~ 16339716 (-) True G147087
TU217241 other downstream 193813 16303857 ~ 16304711 (-) False LOC122326033
TU217095 other downstream 336293 16154364 ~ 16162231 (-) False G146999
TU217094 other downstream 337529 16154364 ~ 16160995 (-) True G146999
TU216757 other downstream 1578126 14915978 ~ 14920398 (-) False stc2b
TU217309 other upstream 130771 16631686 ~ 16633698 (-) False LOC122326634
XR_006247539.1 other upstream 212561 16713476 ~ 16713551 (-) True LOC122327005
XR_006247551.1 other upstream 213261 16714176 ~ 16714314 (-) True LOC122327018
XR_006247561.1 other upstream 213635 16714550 ~ 16714626 (-) True LOC122327028
XR_006247559.1 other upstream 215244 16716159 ~ 16716235 (-) True LOC122327026

Expression Profile