RNA id: XM_043221745.1


Basic Information

Item Value
RNA id XM_043221745.1
length 1922
RNA type mRNA
GC content 0.45
exon number 8
gene id ndfip1l
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 15650303 ~ 15656889 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTCTGACTGACATCACAGGAAGCTCCAAGACAAATCTGATCTGATGAGGGCTGTGGCTTTGCCATTAACTagatatatcattttatttaggcGGTTTGCTGTATAAACAGTTTCTGTTCTGGGATCCTCATTATCTTGCAAGCTCTCTGAGGATGGCTGAGCCAAGTGGGAGATATCAGCAGCTGCCCAATGAAGAGGAGCCAGAGGAGGGAGCTCAGGTGACCGGCGACGCTCCTCCCCCGTACAGCAGTATTGCAGCTGACAGCGCAGCGTATTTTGACTACAAAGACGACGCCGCGTTTCCCAAGCCCCCGTCTTACAACGTGGCCACATCTCTGCCGTCGTACGACGAGGCAGAGCGAACCAAAGCGGAGTCGACTGTCCCGCTGGTGTCTGGCAGAGATGATGACTTTGTGGCCAGAGATGACTTTGAGGACGCTGACCAGCTGCAGATAGGCAATGATGGCATTTTCATGTTGACGTGTTTCATGGCATTTCTCTTCAACTGGATTGGCTTCTTTCTGTCGTTCTGCCTTACGACCTCAGCAGCTGGCCGTTATGGCGCCATCTCTGGGTTTGGTTTGTCTCTCATCAAATGGATTCTCATTGTACGGTTTTCTACTTATTTCCCTGGTTACTTTGATGGGCAATACTGGTTATGGTGGGTGTTTCTGGTGCTTGGCATCCTGCTCTTCCTCCGAGGCTTTATTAACTACGCCAAGATCCGAAAAATGGCAGACTCTGTTTCTACTCTTCCGCGGACCAGAGTTCTCTTCATCTATTAAAGTCACTTGCtggaaatgaaaacacattcaCGGGCCTGCGTTGAACCGTTGAGACCCAGCGGGGGGgatatatttaaggaaaaaaatccTTCCATCTGTTATCTACTCATCTGAATGGAAGACCGCGGAATTCCAGAGCGATGGAGGAAgagggtttttttggtttttttctttttctttttctttctttcccacCCTCTGCTTTTGAAAATGCAGTTCGGGTATCAGATAGCAAGATACTCTTTTTACGTTCCTAGATGTAAAGTAGTGGATGCTAACAGCTCTGTACCTGTTCTGAAATCATTAGTGGTTTGATGTTGAGTGCTGTaacgtattaaaaaaaaaaaaaaaaaaaagccttatgTATGAGATCTTTTTTGTAGTAAAGGCATGCACTGCACTCCCTGTTAACCAGTAGGGGGaagtcttgctttttttatttcagtgttttaccTCCCCCTCCCTTCCTCATTCGGTGACGTTTGACAAGAAGGCAACCAGTCACCGCCGGTCACCATTCATGAAGCGCTTTTCTCTTTGTGAATGGCAGTGTGAAATGAATTGAATCTAAAACAGTCGATGCTTTTCTTCTATTCTCTTCTACTGTTTCTCCCTACATGAcatgaaattaaagttaaagaCATTGGCCCCCGTAGcggcttattaatagtaaaattaaGCTCaaggaatatttttaaaagcgttaGAAGGCGCGTGAATGGCATCTAGCATCCAGCGATTTAGTTTGGGGGGGGGGGTTTGTGCACTGAACATTTGGCCCCGTGCTTTTTCAGCGAAGGaaactttaatattttctcCTTTTATACACGACGCTGATGGCACTGCACATTTTTTCCGACCTTTGAATATACATTTAGCCGGATGCCTCTTCCCCCACCTCGTGCAGTGGCCATGATAGGGGCCCGTTTGATCTCTCGCTGTCTAATCATGCATGATTTTGTTGTGGCTTGTCTGCTCTTGTCACCTTGGTTCTCGTCCATGACACAGGAAGTTGctcttttgtgttcagttttCCATGCAGCTTTGCGGTCACCCTTTGAATTCCAATGGCTGTGCACATGTATTTGCTTGTAAATAAGATACTGCTATTAAATGTCTCTGCTGTTCAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217005 lncRNA downstream 21707 15628263 ~ 15628596 (-) True G146944
TU217003 lncRNA downstream 24543 15625559 ~ 15625760 (-) True G146942
TU216978 lncRNA downstream 46333 15602184 ~ 15603970 (-) True G146925
TU216976 lncRNA downstream 59045 15591055 ~ 15591258 (-) True G146923
TU216900 lncRNA downstream 224122 15424686 ~ 15426181 (-) True G146862
TU217032 lncRNA upstream 18425 15675312 ~ 15679798 (-) True G146962
TU217058 lncRNA upstream 184661 15841548 ~ 15887492 (-) True G146982
TU217091 lncRNA upstream 489711 16146598 ~ 16146996 (-) True G146997
TU217235 lncRNA upstream 570827 16227714 ~ 16228007 (-) True G147080
TU217236 lncRNA upstream 574820 16231707 ~ 16236417 (-) True G147081
XM_043221491.1 mRNA downstream 76752 15507396 ~ 15573551 (-) False LOC122326537
XM_043221490.1 mRNA downstream 76863 15507396 ~ 15573440 (-) False LOC122326537
XM_043221489.1 mRNA downstream 76863 15507396 ~ 15573440 (-) True LOC122326537
XM_043220672.1 mRNA downstream 238058 15357132 ~ 15412245 (-) True kctd16b
XM_043221742.1 mRNA downstream 392019 15244588 ~ 15258284 (-) True rbm27
XM_043221414.1 mRNA upstream 1576 15658463 ~ 15670000 (-) True mpp1
XM_043222084.1 mRNA upstream 46293 15703180 ~ 15747754 (-) True gabrb4
XM_043220706.1 mRNA upstream 646857 16303744 ~ 16304724 (-) True LOC122326033
XM_043220722.1 mRNA upstream 841637 16498524 ~ 16500915 (-) True brcc3
XM_043222085.1 mRNA upstream 845808 16502695 ~ 16505672 (-) True fundc2
TU216757 other downstream 729905 14915978 ~ 14920398 (-) False stc2b
TU216464 other downstream 1386636 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 1423037 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 1427630 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 1782690 13866415 ~ 13867613 (-) True LOC122326201
TU217094 other upstream 497477 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 497477 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 646970 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 682340 16339227 ~ 16339716 (-) True G147087
TU217309 other upstream 974799 16631686 ~ 16633698 (-) False LOC122326634

Expression Profile