fundc2 (fundc2,LOC107713169,LOC107661711,LOC107581894,LOC107695103,LOC107578066)


Basic Information

Item Value
gene id fundc2
gene name fundc2,LOC107713169,LOC107661711,LOC107581894,LOC107695103,LOC107578066
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16502695 ~ 16505672 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222085.1
GCTCCTCGTGCTTTCGAATCACTCTCGCGGTACTTCGCTGTCGAACCGGACACGCCTACTTGCGCAGGTCACGTGACGCGGAGGATGCGCACGGAAATTATCGTCCGGATAGAAAACGCGCAAGAAAATGTCTGAGAAGGACTCCGAAACCTTCGACGTGATGGAGCTGGCCGAGCATGTCAAGAAGCAGAGGTGGTGGAACAAAATGTTCGGAAAAAATAATTCTGGGCCCGCTGCTGAGAAGTACTCCGTGGCGACGCAGCTGGCCATCGGAGGAGTGAGCGGCTGGTGCGCAGGGTACTTGTTCCAGAAAGTCGGAAAGCTGGCAGCGTCGGCTGTAGGCGGCGGCTTCTTTCTGCTCCAGATTGCTCATCACACAGGCTACATTAAAGTAGACTGGAAAAGAGTCGAGCAAGACGTGAACAAGGCCAAGAAGCAGCTGAAGCTGAGTTCAGACAAGCCTCCCAAAGAAGTGAGAACCAAGTTTAACGAGGTGCAAGTTTTTGTCAAGAACAACATTGTTCTCACAGGAGGTTTCGCCGGTGGCTTTCTGCTCGGCCTGGCTTCGTAGGATCTCTCTCGTTGTTACGTCTTCTACCCCGAGGATGTCGTCCAGCTTCTGTGTGATACTGCAGCTTGTATTTAACTCGGCACTCCTAAACATTTAAGAATGTACGCTCCGTTTCTCGGCTGTGCGTTGCTTTAGTATGCACTTAAAACCCCTGTTACGCTTTTGTTCATTTGAACGTTTTGCTATATTATTTTGGTACAAACTATTTTTGACACGAGACTTGAAAAGTCCGCTTGTTTAAACGTGTAAATAGTTGAAATCGGCCCTTTGAAATTCACATCTCAACTTGAAGTTTGACGTCACGGTGACTGATCCAAGtgcatttaattgttaaaactgTTTGTAATAAATCTGGACGTTACTTTAAAGGCCGAGGGGTCGATAaaagttgtaattttaattaataatgacagaaatgtttaaAGTAAATAGACAATCAGGTGTTAAACCAT

Function

symbol description
fundc2 Predicted to be involved in autophagy of mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human FUNDC2 (FUN14 domain containing 2).

NR:

description
PREDICTED: FUN14 domain-containing protein 2-like

GO: NA

KEGG:

id description
K24308 FUNDC2; FUN14 domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222085.1 True 1023 mRNA 0.46 5 16502695 16505672

Neighbor

gene id symbol gene type direction distance location
brcc3 brcc3,LOC107661795,LOC107582010,LOC107569767 coding downstream 1780 16498524 ~ 16500915 (-)
gabrb4 gabrb4,LOC107661713,LOC107581896,LOC103032374,LOC106603192,LOC106563397 coding downstream 754941 15703180 ~ 15747754 (-)
mpp1 mpp1,LOC107661714,LOC107581898,LOC107692928,LOC107587257 coding downstream 832695 15658463 ~ 15670000 (-)
ndfip1l nfip1,ndfip1,ndfip1l,LOC107661716,LOC107581899,LOC106603856,LOC107692929 coding downstream 845806 15650303 ~ 15656889 (-)
LOC122326537 arhgap26,LOC107713172,LOC107661718,LOC107692919,LOC106567493 coding downstream 929144 15507396 ~ 15573551 (-)
ammecr1 ammecr1,LOC108429437,LOC107715796,LOC107713167 coding upstream 22458 16528130 ~ 16547785 (-)
sra1 sra1,LOC107713166,LOC107661709 coding upstream 116371 16622043 ~ 16626267 (-)
csf1rb LOC107715843,LOC107562165,LOC107703092 coding upstream 128342 16634014 ~ 16649696 (-)
LOC122326401 dkc1,LOC107715851,LOC107742423,LOC107581884,LOC107661706,LOC107562155,LOC107703090 coding upstream 205122 16710794 ~ 16718405 (-)
LOC122327005 NA coding upstream 207804 16713476 ~ 16713551 (-)
G147090 NA non-coding downstream 54622 16376051 ~ 16448073 (-)
G147081 pdlim4,LOC107661708,LOC107703091 non-coding downstream 266278 16231707 ~ 16236417 (-)
G147080 NA non-coding downstream 274688 16227714 ~ 16228007 (-)
G146997 NA non-coding downstream 355699 16146598 ~ 16146996 (-)
G146982 fstl4,LOC107692968,LOC107739207 non-coding downstream 615203 15841548 ~ 15887492 (-)
G147096 NA non-coding upstream 2709 16508381 ~ 16509247 (-)
LOC122326074 NA non-coding upstream 48167 16553839 ~ 16554655 (-)
G147138 NA non-coding upstream 192137 16697809 ~ 16698607 (-)
G147140 NA non-coding upstream 195318 16700990 ~ 16701197 (-)
LOC122326402 NA non-coding upstream 196262 16701934 ~ 16704206 (-)
G147087 NA other downstream 162979 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 197971 16303744 ~ 16304724 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other downstream 340464 16154364 ~ 16162231 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other downstream 1582141 14913089 ~ 14920554 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other downstream 2239028 14259685 ~ 14263667 (-)
LOC122326634 ppp1r36 other upstream 121534 16627206 ~ 16633897 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other upstream 213400 16719072 ~ 16730030 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other upstream 332666 16838338 ~ 16847221 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 588916 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 1383560 17889232 ~ 17930161 (-)

Expression


Co-expression Network