sra1 (sra1,LOC107713166,LOC107661709)


Basic Information

Item Value
gene id sra1
gene name sra1,LOC107713166,LOC107661709
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16622043 ~ 16626267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220805.1
GACGGGAATTCTCCTCAGAGTTGATGTCGGAGTCCGGGCTGCGATGAGCGATCGGTTTGTAAAACCAGGTAATCAGGAGCACGGGTGGAATGATCCTCCGCAGTTTTCATACGGCCTGCAGAAGGATTCAGGAGGACCGAAGCGGAATATTCTCAATAAGAGGGTGCATGCGCCCCAGTTCACAGGTTCTGGATCAGGTCAATCCCCAGCAGTGATGATGCCGACGCCGCCCCGAGGAACGAATCCTCCACCCTCTGTGTGTCCCAAAACTCCCTCGGACGGAAAGATAGAGGCGGCAGAGCTGGAGACGGAGCCGTCCTTTGAGGATGTGCAGGAAGCGCTTCACGGAGCGCTGGATGCATGCAGACGCACCGTGAAGaaacagatCTGTGACGATGTAGAAAGACGTCTGAAGCTTTTTGAGGACATGTGGAAGAGTGGAAAACTTTCTTCTTTGGTTAAACACAGGATGCACAGATTGTCCCAAGACCTAAAAAGAAAGGAGTGGGATGCAGCCGACGAGATCCACAGAGCACTGATGGTGGACCACGTTGCTGAAGTCAGTCAGTGGATGGTGGGAGTCAAGCGTCTCATCGCTGAAGCTCGGAGCCTGAACCCAGAACAAAACAACGGCCCTGGTCCGGGCTCGTGAGGACCGCACAGAAACACATGCTGCATCCTAGAAGTCGCCAAAGTGATCCGTGTTAACTTATGTAAAGTTTTGTATAATCCACCTCTGAAAATGTGCCCATTCCCATCTATAtcatcttcttttgttttttttctttttttttggagattgGTGCCGGGGGAAAAAAgtctttctttactttttcttcatcagaaataatataaatattgtaggTATGAAGTGTTACCGCTGTATATaaaattctgcttttaaaaaaaggtgtgATTGGGAATCATTTCAGCCggttgcatatatatatatatatatatatatatatatatat

Function

symbol description
sra1 Predicted to enable nuclear receptor coactivator activity. Acts upstream of or within heart contraction. Predicted to be active in nucleus. Orthologous to human SRA1 (steroid receptor RNA activator 1).

NR:

description
PREDICTED: steroid receptor RNA activator 1-like isoform X1

GO:

id name namespace
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220805.1 True 974 mRNA 0.47 5 16622043 16626267

Neighbor

gene id symbol gene type direction distance location
ammecr1 ammecr1,LOC108429437,LOC107715796,LOC107713167 coding downstream 74258 16528130 ~ 16547785 (-)
fundc2 fundc2,LOC107713169,LOC107661711,LOC107581894,LOC107695103,LOC107578066 coding downstream 116371 16502695 ~ 16505672 (-)
brcc3 brcc3,LOC107661795,LOC107582010,LOC107569767 coding downstream 121128 16498524 ~ 16500915 (-)
gabrb4 gabrb4,LOC107661713,LOC107581896,LOC103032374,LOC106603192,LOC106563397 coding downstream 874289 15703180 ~ 15747754 (-)
mpp1 mpp1,LOC107661714,LOC107581898,LOC107692928,LOC107587257 coding downstream 952043 15658463 ~ 15670000 (-)
csf1rb LOC107715843,LOC107562165,LOC107703092 coding upstream 7747 16634014 ~ 16649696 (-)
LOC122326401 dkc1,LOC107715851,LOC107742423,LOC107581884,LOC107661706,LOC107562155,LOC107703090 coding upstream 84527 16710794 ~ 16718405 (-)
LOC122327005 NA coding upstream 87209 16713476 ~ 16713551 (-)
LOC122327018 NA coding upstream 87909 16714176 ~ 16714314 (-)
LOC122327028 NA coding upstream 88283 16714550 ~ 16714626 (-)
LOC122326074 NA non-coding downstream 67388 16553839 ~ 16554655 (-)
G147096 NA non-coding downstream 112796 16508381 ~ 16509247 (-)
G147090 NA non-coding downstream 173970 16376051 ~ 16448073 (-)
G147081 pdlim4,LOC107661708,LOC107703091 non-coding downstream 385626 16231707 ~ 16236417 (-)
G147080 NA non-coding downstream 394036 16227714 ~ 16228007 (-)
G147138 NA non-coding upstream 71542 16697809 ~ 16698607 (-)
G147140 NA non-coding upstream 74723 16700990 ~ 16701197 (-)
LOC122326402 NA non-coding upstream 75667 16701934 ~ 16704206 (-)
G147129 NA non-coding upstream 82145 16708412 ~ 16709314 (-)
G147217 NA non-coding upstream 121740 16748007 ~ 16752890 (-)
G147087 NA other downstream 282327 16339227 ~ 16339716 (-)
LOC122326033 NA other downstream 317319 16303744 ~ 16304724 (-)
G146999 LOC107603265,LOC107742454,LOC107661689,LOC107692966,LOC107578430,LOC107739203 other downstream 459812 16154364 ~ 16162231 (-)
stc2b stc2b,LOC107587244,LOC107713187,LOC107581911,LOC107661727,LOC107727250,LOC108441629 other downstream 1701489 14913089 ~ 14920554 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other downstream 2358376 14259685 ~ 14263667 (-)
LOC122326634 ppp1r36 other upstream 939 16627206 ~ 16633897 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other upstream 92805 16719072 ~ 16730030 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other upstream 212071 16838338 ~ 16847221 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other upstream 468321 17094588 ~ 17254372 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other upstream 1262965 17889232 ~ 17930161 (-)

Expression


Co-expression Network