RNA id: XR_006247420.1


Basic Information

Item Value
RNA id XR_006247420.1
length 1943
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC122326073
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14871248 ~ 14873810 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttaatttttacaCGTTGGCGCTTTTAAAGGTCATCGTTTATTTATACGCTGTCTTCTAATCATGAGTGGCCTATGACTTCAGGTCATCTGGAGCCTGTGATAATCTGACTCACTTCCTCTGTCATGTGAGGAGAGAGAAAACTCTGTGGCGCAAGATGGGGCCACTGACATGATGTGCAAGCACACTGAAAAATCATGACGGCTGATGTCATAACGTACTATAAAAACAACTCAAGAAAAGTCATTACAGGACATTCCAAGATGGGTTCAAATTCTTTTCTTACGCTTACGGTCAAGTAACGGTAAAGAAACTGGTAAAGTAAATGGTCGGCCTAGTTTCAGTGGAAATGGATTCACTGGttattgttgaaaaataaactggAGAAAGCACAATGCGCATTGGCGAGGAAATGCGTTAAAGCTCGAAAACCAGAATGGCACGAGGCCTGATATGCGGCATTGTTTTGTTACCCTTGGAAACTGGGTCGAAAAAAGGCTTTCGTATGTACGAGGAAAGTGAAAAAAGTTCATCTAATAACAGCCATATGACGGTTAGCGAGGACGAGATCTCGCACTCTTGATTGGCAAACCGAACAGGGTTAGGATTTCCCCGTCTCAACCCACGGACTTTACAGAGCGGAAATGGTGCATTGAATACTTAACCAACGTTTCCTCCTGCTCTGGCGGTTGGGGTTTTCTCAACGCCGACGTCGCTTGCACGTTAGCCTAGTCTGCAATAACAGGCTATCGATGGAAAAACAATGTTATTCGATCAACCTTTATCCGTTAAACGCGATTGCGACACCGTCGGTGGTGTGACGTGGCTCTATTATCACGGGCTGCGAGTTGCGCAATTACGGCTCTCTGTGCACTTTGAGCAAAATGGATAGCGGTGGGACTTTCCCATGACTGTGTGTGTAGTGTGGAACAAACGCCCATGCAAATGAGAGCGCTAATCGATCGGTTTATATAGGGATGCGCTGAGCGAGTAGGCGGCAGAAGAGCTTTCTGCATGCGTCTTATCATTCGCTGCAGGTGCGTGAGAGACATGATTCAGCATCCTCAATCTGGTACTGGTACCGAAATGACTCACCGACAACAGATGATGTGGACCTGTCGAGAAAAGAGGGGAAAACTAAAGAGGGAAGCTGAACCGGACTAGACTACATATCAGTGGGATGCATCTGAGCAAGCTGTACTTTCAAGAAAAACTTTTGCTGGAATCGCgatgaaaaaaagaggaaaccCTAAACAAACACCAGAGACGAAGCGGTTTTGTTACACATTTTACCTAAAAATCTATCCTATTTAAGAAGCGATCTGCTTTTAGGGTGATTTTATTGACACTGTAACATTAAGTTACGTTTAGTTTCTTGCTTAGGCCGAATAAAATGGCCAGCTCGAAGCATTCACAGTCTGCTTGAATGGAGCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGTTGTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGCTCACGGCATCTGCTCTGAACTACGACCTCAACCAAAACGCCTGCTGCTGGACTGGAAGGTACTGATACGGTTTACTACGTTATCTTCTTTTAGTTTAGAGATGACTGCTGTTTTTAGCCACACTAGTTACTAGTGTATTATTAACCAACTCCCTTTGTGTTAAGCATGTATAAATGATGCTTAAGTAGATTCTGTCAGGTTGTGGATAATTACTGCATAGATTTTGCCTTCATTTGTAAGAACCTGTTTGGTGAAAATACAccattgtgtatttttttactttgttgatgtcagaaaaatagcattaaattgtgtttttcttgaTTCTTCGTACAAACCATTTTGCAGCACAAATGAGTTCTATTAAATATTAGTCTtctactgtaataaaatgttgtgaaaataaaaaaagtatacgAGTATGATACACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216558 lncRNA downstream 428357 14441999 ~ 14442891 (-) True G146622
TU216443 lncRNA downstream 698449 14169728 ~ 14172799 (-) True LOC122326149
XR_006247434.1 lncRNA downstream 698449 14170402 ~ 14172799 (-) False LOC122326149
XR_006247433.1 lncRNA downstream 698488 14170402 ~ 14172760 (-) False LOC122326149
XR_006247432.1 lncRNA downstream 698796 14170402 ~ 14172452 (-) False LOC122326149
TU216762 lncRNA upstream 79401 14953211 ~ 15001740 (-) True G146753
TU216818 lncRNA upstream 294866 15168676 ~ 15168913 (-) True G146803
TU216843 lncRNA upstream 386098 15259908 ~ 15260460 (-) True G146822
TU216853 lncRNA upstream 395337 15269147 ~ 15269677 (-) True G146827
TU216861 lncRNA upstream 403739 15277549 ~ 15278180 (-) True G146835
XM_043220754.1 mRNA downstream 5846 14810910 ~ 14865402 (-) False ppp2r2bb
XM_043220755.1 mRNA downstream 25223 14810910 ~ 14846025 (-) True ppp2r2bb
XM_043220756.1 mRNA downstream 44268 14810910 ~ 14826980 (-) False ppp2r2bb
XM_043220757.1 mRNA downstream 46629 14810910 ~ 14824619 (-) False ppp2r2bb
XM_043221780.1 mRNA downstream 301640 14549698 ~ 14569608 (-) False map4k6
XM_043222105.1 mRNA upstream 39279 14913089 ~ 14920554 (-) True stc2b
XM_043222106.1 mRNA upstream 58485 14932295 ~ 14935331 (-) True bod1
XM_043220809.1 mRNA upstream 312822 15186632 ~ 15192148 (-) True drd1b
XM_043221980.1 mRNA upstream 362111 15235921 ~ 15237261 (-) True pou4f3
XM_043221742.1 mRNA upstream 370778 15244588 ~ 15258284 (-) True rbm27
TU216464 other downstream 607581 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 643982 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 648575 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 1003635 13866415 ~ 13867613 (-) True LOC122326201
XR_006247558.1 other downstream 1426041 13445078 ~ 13445207 (-) True LOC122327025
TU216757 other upstream 42168 14915978 ~ 14920398 (-) False stc2b
TU217094 other upstream 1280554 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 1280554 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 1430047 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 1465417 16339227 ~ 16339716 (-) True G147087

Expression Profile