RNA id: XM_043222106.1



Basic Information


Item Value
RNA id XM_043222106.1
length 1122
RNA type mRNA
GC content 0.43
exon number 4
gene id bod1
representative True

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14932295 ~ 14935331 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTGGCGCCGTGGTTGACGAAACGCACCAACATACAGCAGCGCAGAAGAAGACGAGGAAGCGCTcttatttacttttgttgtCATCTCAGaacgcatttatttatttattttgtttcaaacattaaatattagacTTCAATCGCGAGAGAATCTGTTGCAAGGCCTAGGGAGAGGTTTGTGTTCTTCTGTTACCGAGGGCAGGGAATAgcggataataataatacatggcAGAGGGCAGCAGCAGTCTGAGCAGCGCTCCTCCAGGAGACCCCCAGCTCATCTCGCTCATAGTGAGGCACCTGAAGAACAGAGGCCTGTTTGATGAGTTCAGAAGAGACTGTCTGGCGGACGTGGACACCAAGcCGGCTTATCAAAATCTGCGACAGAAGGTGGACAACTTTGTGTCCAATCATCTCAGTACTCAAGAATGGAATCCATCCATCAACAAGAACCAAGTGAGGAATGGCTTGAGACAAAGCGTAGTTCAGTCAGGGATGTTGGAATCAGGGGTGGACCGTATCATTACTCAGGTGGTGGACCCTAAATTAAACCATATCTTCAGGCCACACATCGAGGACGCCATTCATGAATTCCTAGCCgcagagaagaaagaagaggGCACACTGAATTTAGCCCCTGACGTTGAACAACAGGAAATGACTAGCAACTCCGGAGCCAAAACGCAATGAGgtaCAAGGATACACTTTTTGCTGTCACATGAAGATCACCTGATGTCCTTCCATGCCTGGCTACAGTGAATGAACAGTTGCTGAGCACTGGAATATTGGAAGTTTGCACTAATTAATGGTGGttggattattattaatttttttttttttagcatgctaGATGAAAGCAGGTCGTCCAGCCCATGCTTTTGATGTCTGGTGTAGTTCTTTCAGCACTAAATAGCAACTAAATTTGATTTGTCCAAATAAATCCATCTCAAAATAACACCTGATATgaaatacttaatttttatttggctGAAGCCTGACGGAAATGATCCTTTTTATACAGCTGGATTTGTGAAATGcttctcatttatttctttcgCTATTCTATTCTAATGGGACTCATAGCAGcgtttttacaataaatgtaactttttaagAAAAGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006247420.1 lncRNA downstream 58485 14871248 ~ 14873810 (-) True LOC122326073
TU216733 lncRNA downstream 58696 14871257 ~ 14873599 (-) False LOC122326073
TU216558 lncRNA downstream 489404 14441999 ~ 14442891 (-) True G146622
XR_006247434.1 lncRNA downstream 759496 14170402 ~ 14172799 (-) False LOC122326149
TU216762 lncRNA upstream 17880 14953211 ~ 15001740 (-) True G146753
TU216818 lncRNA upstream 233345 15168676 ~ 15168913 (-) True G146803
TU216843 lncRNA upstream 324577 15259908 ~ 15260460 (-) True G146822
TU216853 lncRNA upstream 333816 15269147 ~ 15269677 (-) True G146827
TU216861 lncRNA upstream 342218 15277549 ~ 15278180 (-) True G146835
XM_043222105.1 mRNA downstream 11741 14913089 ~ 14920554 (-) True stc2b
XM_043220754.1 mRNA downstream 66893 14810910 ~ 14865402 (-) False ppp2r2bb
XM_043220755.1 mRNA downstream 86270 14810910 ~ 14846025 (-) True ppp2r2bb
XM_043220756.1 mRNA downstream 105315 14810910 ~ 14826980 (-) False ppp2r2bb
XM_043220757.1 mRNA downstream 107676 14810910 ~ 14824619 (-) False ppp2r2bb
XM_043220809.1 mRNA upstream 251301 15186632 ~ 15192148 (-) True drd1b
XM_043221980.1 mRNA upstream 300590 15235921 ~ 15237261 (-) True pou4f3
XM_043221742.1 mRNA upstream 309257 15244588 ~ 15258284 (-) True rbm27
XM_043220672.1 mRNA upstream 421801 15357132 ~ 15412245 (-) True kctd16b
XM_043221491.1 mRNA upstream 572065 15507396 ~ 15573551 (-) False LOC122326537
TU216757 other downstream 11897 14915978 ~ 14920398 (-) False stc2b
TU216464 other downstream 668628 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 705029 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 709622 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 1064682 13866415 ~ 13867613 (-) True LOC122326201
TU217094 other upstream 1219033 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 1219033 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 1368526 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 1403896 16339227 ~ 16339716 (-) True G147087
TU217309 other upstream 1696355 16631686 ~ 16633698 (-) False LOC122326634

Expression Profile