RNA id: TU216861


Basic Information

Item Value
RNA id TU216861
length 546
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G146835
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 15277549 ~ 15278180 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatacacatatacacacatacatacatatatacacataaatactatgttatataataatataaaaattatacacacacaacaaataaatacatttatattaaaaatatatcaataaatatatcaatatttttagataatatttgctattaataaaatgtttattttattcaataaaattttTGAGTAACACAATTCTTTAATATTTCTCCTTGGTTGAGGGAACAATGCATATCAAatcctgcattaaaaaaaaacatcacatttcaaatatatttctaaaagcCCGGCAATAactcagaaaacattttatgtctGAATGAACGCTGTACGCGACATCAAAGCGAGAAGCAGCGAAGAAGCATTAGCAATGCGCGGCATGCTTCTAAAATTAGTCCGTCTCGAGCTGCGTGCAGCACAGGCCAGATCAACCATTAAAAACCAGAAACAATAGATGCGGCGGCTTTAACAGGGCCTCGGTGGGCTCTCATCATCACCTCGGATCTGAAGACACAGAACGGTTTCCCAGGGCAACAGTCCTC

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216853 lncRNA downstream 7872 15269147 ~ 15269677 (-) True G146827
TU216843 lncRNA downstream 17089 15259908 ~ 15260460 (-) True G146822
TU216818 lncRNA downstream 108636 15168676 ~ 15168913 (-) True G146803
TU216762 lncRNA downstream 275809 14953211 ~ 15001740 (-) True G146753
XR_006247420.1 lncRNA downstream 403739 14871248 ~ 14873810 (-) True LOC122326073
TU216869 lncRNA upstream 5920 15284100 ~ 15289721 (-) True LOC122326900
XR_006247529.1 lncRNA upstream 5923 15284103 ~ 15288663 (-) False LOC122326900
TU216900 lncRNA upstream 146506 15424686 ~ 15426181 (-) True G146862
TU216976 lncRNA upstream 312875 15591055 ~ 15591258 (-) True G146923
TU216978 lncRNA upstream 324004 15602184 ~ 15603970 (-) True G146925
XM_043221742.1 mRNA downstream 19265 15244588 ~ 15258284 (-) True rbm27
XM_043221980.1 mRNA downstream 40288 15235921 ~ 15237261 (-) True pou4f3
XM_043220809.1 mRNA downstream 85401 15186632 ~ 15192148 (-) True drd1b
XM_043222106.1 mRNA downstream 342218 14932295 ~ 14935331 (-) True bod1
XM_043222105.1 mRNA downstream 356995 14913089 ~ 14920554 (-) True stc2b
XM_043220672.1 mRNA upstream 78952 15357132 ~ 15412245 (-) True kctd16b
XM_043221491.1 mRNA upstream 229216 15507396 ~ 15573551 (-) False LOC122326537
XM_043221490.1 mRNA upstream 229216 15507396 ~ 15573440 (-) False LOC122326537
XM_043221489.1 mRNA upstream 229216 15507396 ~ 15573440 (-) True LOC122326537
XM_043221744.1 mRNA upstream 372123 15650303 ~ 15656889 (-) True ndfip1l
TU216757 other downstream 357151 14915978 ~ 14920398 (-) False stc2b
TU216464 other downstream 1013882 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 1050283 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 1054876 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 1409936 13866415 ~ 13867613 (-) True LOC122326201
TU217094 other upstream 876184 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 876184 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 1025677 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 1061047 16339227 ~ 16339716 (-) True G147087
TU217309 other upstream 1353506 16631686 ~ 16633698 (-) False LOC122326634

Expression Profile