RNA id: XM_043220754.1


Basic Information

Item Value
RNA id XM_043220754.1
length 2678
RNA type mRNA
GC content 0.47
exon number 9
gene id ppp2r2bb
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14810910 ~ 14865402 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCGGCCAGTAGGCGGACAGACGCAGGAGCTTCTTTCAACAAACACCCCTCCCACCCTCCAGACTGGGGCAAAACAAGCCATCCTCCAGCAAGCGACGGGGAGCGAGAAGCATGGTCAGCGGGAGCGACACGGATGCCTCCTATCCGACAGAACCGAAAGAAATGAGCGTGGGGTTTTGCCATCGCGCATTCCCATCCGCCGCGGTGTGTCCGTGAGCGGCACGAGGACAGCATAAAGTAATGCGCATACTAAATCCAGTCAAAAGATGAAATGCTTCTCCCGGTACCTGCCTTACATCTTCAGACCGCCGAGCAGCCTCCTCTCGTCCAGCTGTCACACTGAGGCTGACATCATATCCACAGTTGAGTTCAACTCAACAGGGGAGCTCCTGGCCACTGGGGACAAAGGTGGACGAGTGGTGGTCTTCCAGAGGGAACAGGAGAGTAAGAACCAGCCTCACCGTCGGGGGGAGTACAATGTTTACAGCACCTTTCAGAGCCACGAGCCTGAGTTTGACTACTTGAAGAGCCTGGAGATTGAGGAGAAGATCAACAAAATCCGCTGGCTGCCTCAACAGAATGCCGCCTATTTCCTCCTGTCCACCAATGATAAAACTGTGAAGCTATGGAAAATCAGCGAGCGAGACAAACGACCAGAAGGCTACAATCTGAAGGATGAAGAAGGCAGGATCCGAGACCCAACCACCATCACATCTCTGAGGGTGCCTGTGTTGAGGCCCATGGACTTGATGGTGGAGGCAACACCACGTCGCATTTTCTCTAATGCTCACACCTATCACATTAACTCCATCTCGGTCAACAGCGACTATGAGACATACATGTCCACGGATGATCTGAGGATCAACCTATGGAACCTGGAGATCACAAACCGAAGCTTTAATATTGTGGACATAAAGCCGGCCAACATGGAAGAATTGACCGAGGTGATCACAGCGGCCGAGTTTCACCCTAACCAGTGCAACACATTTGTCTACAGTAGCAGCAAGGGCTCCATAAGATTGTGCGACATGAGAACCTCCGCACTTTGTGACAACCATTCTAAATTATTTGAGGAACCAGAAGACCCCAGTAATCGCTCCTTCTTCTCAGAGATAATTTCCTCCATCTCAGATGTGAAATTCAGCCACAGTGGACGTTACTTGATGACCCGTGACTACCTCACAGTGAAGGTGTGGGACATCAACATGGAGAGCAAGCCTTTGGAAACTTACCAGGTCCATGACTACCTTAGGAGTAAGCTGTGCTCGCTGTACGAGAATGATTGCATCTTCGACAAGTTTGAATGTGTCTGGAATGGAACTGACAGTGTCCTAATGACCGGCTCCTACAACAATTTCTTCCGTATGTTCGATCGAAACACTAAGCGCGACGTGACTCTGGAGGCGTCGCGGGAAAACAGCAAACCCAGAGCCATCCTCAAACCACGCAAAGTTTGTGTTGGTGGCAAACGTCGTAAAGATGAAATCAGTGTGGACAGTCTGGACTTCAGTAAGAAGATCCTACACACTGCATGGCACCCCAATGAGAACATCATCGCTGTGGCCGCCACCAACAACCTCTATATATTTCAGGACAAGGTCAACTAGCATGTAGCTCTGATGTCTCCAGTTATCACAGCAACAAGAGGCATTATTTCTCTAGATGGAAATGTCGGACTCACTAGCAGTGAACTGGTGAGGAACATCTAGATGAGCTTTGCCTTCTACAGCAGATTTGATACTGCACTGGATCTAACAAAACTTGCACTGCAACCACGGACAATGACACTGGCTGTTggactgcttttgtttttaattatttcaaatctcCCTCGCTATAGGTTTACTGGTAATGCACAGCATTACAAAGATGATCTTTtgacttttaaatgtcatttaaggCCCTTCCACATGACTCGCGTCAGGGCTTGAGCAACATTTGACCTCCGTGAGAAGCGGCGTAGATGTCGCCAGGGAAGGATGTTGCAAGGTTGGAAGAAAATGGGAAAtgtacaaagtaaaaataaagtgtatttgaGCTTAGAGCAGAAAAAGAGTCCTGCTGGTTGctttgagaggaaaaaaaatagaatgcGTTTCTTGGAATGTCATGATATGCCTTTGAAGTTGCTCAGAGGCACAGCCTCTTCCATCTTGCTTTGATTTTTGTGCTGGCGTCTCTCACCTAACGTCATGCGAAGTTGGTAACCATTGGATGCGTTTTGAAAGTGCAACGAAAAGCCAAGTCAAATTTGACGTTGAATGCTACAATATTTGCTATAATATTTCAACTTCAAGCTGTTGTGTGCAATGCATTGAAGAGTCATGTGAGAGGGCCTTAAGATAACGAGAGGAAATGTCAGTATTAAGCCTCCATCCAATTCTTGCTTCTTGGCAGGACGGAGGATGCGGATGGCTTTGATTACTGCATATGTTGTTGTGGCTGCTGTGGCCGTGAGGTATCCCAACTTTTCAGCttctgaattttcatttccCGTTTTACTTTATGAAGGTGCATGCATCATTGCGAAACCCTGCATACGGGTTGATTGATGCAACAAACAGGAATGGTGTAAAATTGAAGTAAACAATGTAGCAAATGTACTAATGTTCTGCTTTTTTGTTctaattttataaagaaaaggggaaaaaactaataaaaaaaaaatcaagaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216558 lncRNA downstream 368019 14441999 ~ 14442891 (-) True G146622
TU216443 lncRNA downstream 638111 14169728 ~ 14172799 (-) True LOC122326149
XR_006247420.1 lncRNA upstream 5846 14871248 ~ 14873810 (-) True LOC122326073
TU216733 lncRNA upstream 5855 14871257 ~ 14873599 (-) False LOC122326073
TU216762 lncRNA upstream 87809 14953211 ~ 15001740 (-) True G146753
TU216818 lncRNA upstream 303274 15168676 ~ 15168913 (-) True G146803
TU216843 lncRNA upstream 394506 15259908 ~ 15260460 (-) True G146822
XM_043221780.1 mRNA downstream 241302 14549698 ~ 14569608 (-) False map4k6
XM_043221783.1 mRNA downstream 241303 14549698 ~ 14569607 (-) False map4k6
XM_043221779.1 mRNA downstream 241303 14549698 ~ 14569607 (-) True map4k6
XM_043221782.1 mRNA downstream 241304 14549698 ~ 14569606 (-) False map4k6
XM_043221781.1 mRNA downstream 241305 14549698 ~ 14569605 (-) False map4k6
XM_043222105.1 mRNA upstream 47687 14913089 ~ 14920554 (-) True stc2b
XM_043222106.1 mRNA upstream 66893 14932295 ~ 14935331 (-) True bod1
XM_043220809.1 mRNA upstream 321230 15186632 ~ 15192148 (-) True drd1b
XM_043221980.1 mRNA upstream 370519 15235921 ~ 15237261 (-) True pou4f3
XM_043221742.1 mRNA upstream 379186 15244588 ~ 15258284 (-) True rbm27
TU216464 other downstream 547243 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 583644 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 588237 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 943297 13866415 ~ 13867613 (-) True LOC122326201
XR_006247558.1 other downstream 1365703 13445078 ~ 13445207 (-) True LOC122327025
TU216757 other upstream 50576 14915978 ~ 14920398 (-) False stc2b
TU217094 other upstream 1288962 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 1288962 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 1438455 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 1473825 16339227 ~ 16339716 (-) True G147087

Expression Profile