RNA id: TU215846



Basic Information


Item Value
RNA id TU215846
length 814
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC122326016
representative False

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13100116 ~ 13101521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GATGAAATAAGAGCCACTATTATTGACCACGTGATAAACCATGGTCTGTCATTGAGAGAGGCAGGTGAAAGAGTCCAGCCCAATCTTAGACGGTCAACTGTGGCATCCATTATCCGAATTTTTCAACAAACCAACAGAACACAACGACTTCCTTGCTCTGGGGGAAGAAGAAAACTGCTCACTGAGGACCAAGAGCATGCTATTGTAGGGTGGGTTATAGCtgacaatgcaataaaacttaGAGAAATTCAATCCAGAATTGTACAGGACAACCTGGTATTCCAGAATGTGGAAAGCATCAGCCTGGCTACCATCACTCGAactctgaacaaacacagaattCGAATGAAACAGCTGTACAAAGTGCCCTTTGAAAGAAACAGTGAGCGGGTCAAGGAACTCCGACACCAATATGTCCAGagAGTTATGGAGTTGGAGGCTAATCAGACAccacataaattcatttatgtagATGAGGCAGGATTTAACCTGGCAAAAACTCGTAGACGAGGAAGAAATCTGATTGGAAAAAGGGCCACTGCTGATGTTCCGGGTCAAAGAGGAGCAAATATCACAATGTGTGCTGCAATCTCAAGTGCTGGTTTGGTCCTGCAGAAAAGCCAGATCGGTCCCTTCAACACAGAGcgccttcttttgtttttagatgacCTCCACCAACAACTGGTACCAGCAGCAGAAAGGGAACAAGTAGGAGGAAACATGAGGACATTTGTGATTGTATGGGACAATGTAGCGTTCCACCATTCACATGCAATCACAAATTGGTTTGCAGCCCATCTGAGAATGATTTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215838 lncRNA downstream 37457 13062086 ~ 13062733 (-) True G146155
TU215836 lncRNA downstream 38568 13060420 ~ 13061622 (-) True G146153
TU215834 lncRNA downstream 40161 13059731 ~ 13060029 (-) True G146151
TU215833 lncRNA downstream 45016 13054953 ~ 13055174 (-) True G146150
TU215828 lncRNA downstream 50328 13049324 ~ 13049862 (-) True G146145
TU216020 lncRNA upstream 483211 13584454 ~ 13584797 (-) True G146284
TU216051 lncRNA upstream 581794 13683037 ~ 13685204 (-) True G146312
TU216135 lncRNA upstream 698093 13799336 ~ 13799571 (-) True G146373
TU216140 lncRNA upstream 717861 13819104 ~ 13823309 (-) True G146378
TU216310 lncRNA upstream 983263 14084506 ~ 14088182 (-) True G146468
XM_043222043.1 mRNA downstream 155222 12900298 ~ 12944968 (-) False kif4
XM_043222044.1 mRNA downstream 155222 12900298 ~ 12944968 (-) False kif4
XM_043222042.1 mRNA downstream 155222 12900298 ~ 12944968 (-) True kif4
XM_043221666.1 mRNA downstream 241738 12772392 ~ 12858452 (-) False plrdgb
XM_043220693.1 mRNA upstream 49640 13150883 ~ 13153001 (-) True LOC122326019
XM_043220694.1 mRNA upstream 52263 13153506 ~ 13155476 (-) True LOC122326020
XM_043221697.1 mRNA upstream 142084 13243327 ~ 13245313 (-) True mrpl22
XM_043222132.1 mRNA upstream 157950 13259193 ~ 13263225 (-) True cnot8
XM_043221415.1 mRNA upstream 162331 13263574 ~ 13299796 (-) True wwc1
TU215842 other downstream 16696 13083124 ~ 13083494 (-) True G146159
TU215551 other downstream 724645 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 787318 12312799 ~ 12312872 (-) True LOC122327024
XR_006247556.1 other downstream 787542 12312575 ~ 12312648 (-) True LOC122327023
XR_006247555.1 other downstream 787764 12312353 ~ 12312426 (-) True LOC122327022
XR_006247558.1 other upstream 343835 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 765172 13866415 ~ 13867613 (-) True LOC122326201
TU216432 other upstream 1117368 14218611 ~ 14222673 (-) False dynll2b
XR_006247436.1 other upstream 1121900 14223143 ~ 14227266 (-) False srsf1b
TU216464 other upstream 1158442 14259685 ~ 14263667 (-) True G146556

Expression Profile