RNA id: XM_043220694.1


Basic Information

Item Value
RNA id XM_043220694.1
length 1864
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122326020
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13153506 ~ 13155476 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCATTCAGTTCAACCGTGACAGCGTCTGACGAGCATATCGCGAGAAGCGGGAATAGAAAACGCTCTATAATGTTAtcgattttatttaatcaagaaTGTTGCATCTGGGAATAGGCAGTTTCCACTGAACACTATCGTTACTTGCTTTAAGCTGTTTGAAAGGAATCCTTAACGATGGATAAACAAAGGCGCGGATGGGAAAGCTGGTGGATGGCTTCGTGTTTCTCCTTTCTTCTCTGCTTCGGACCGCAGGTTTCAGCTCAGATAAGATACACTGTTCCAGAGGAAATGAAAGAGGGATCTGTTGTGGGGAATATTGCTAAAGATCTTGGACTTGACGTGAGTACCCTGATCGACAGACGGTTCCGTATAGTCTCTGGTTCTAAAGACGCGTTTTTCCAGCTAAACCAGAACAATGGCGAGTTGTATATTCATAGAAGCATAGACAGAGAGCAGCTCTGTGAAGGGAACGGTGCATGCGTAGTAAACCTAAAAACCGCGGTCGAAAATCCTTTAGAAATCCACTACGTGGCTGTAGAAATAACAGACATAAATGACAACCGTCCTAGTTTTTCTGAACAGAATCAGCATCTCGAGATCGCAGAACACACCCCTATAGGAACGAGCTTCCAGCTGCACGCAGCGCGAGACCAGGATGCCTCGCCGTATTCTGTTCGTTTGTATAAACTGAGTCAGGATGAAAATTTCGAGATCGACATCAGAAACAGCGATGAGGAAAAGATCCCCTTTTTAGTGCTGAAAAAACCACTCGATCGTGAACGTAAGTCGGAGCACCTGCTCATTTTAAAAGCCCTCGACGGTGGGAACCCTCCAAAATCGGGGACCCTTAACATCACCGTGACTGTGTTGGATATTAACGACAATCGCCCCGTGTTCACTCAAGACACTTATTCTGTCAGTTTACAGGAAAACTCCCCAGTTGGGACGactgtgattaaaataaaagctactgATAGCGACGAGGGTCCAAACAGTGACGTTGAATATTCGCTTGGTAAAACCTTAAAGCGCAAAGTTTATGAGGTGTTTCAGTTGGATCGCATTACAGGCGAAATAAAGGTTAAAGGCGAGATAGACTTTGAGGACACAGACGTTTACAAACTTGACGTTGAGGCTTCAGATAAAGGTCAGCCTCCATGGACAGTTCAAGGTCgtgttattataaaaatacaagatATAAACGATAATAAGCCTGAAATTGAGCTAACTTCATTATCTAATATCGTTGCTGAAGACTCTCAACCTGGAACAGTAATTGCGTTGATTAGTGTCACAGATAAAGACTCCGGTGTTAATGGTAAAGTTGTATGTAGTCTCTCAGACAATGTTCCTTTCGAGCTGAAACCCTCTTTTCAAGATAATATGTACTCGCTGGTGACAAAGGGGCGTTTGGATCGTGAACTTGTGCCCCATTATGATATCAGTGTCACAGCAGCAGATTTAGGTCAGCCGTCCTTATCATCGATCAAAACCTTAAGCATCCAAGTAGCAGATGTGAATGACAACCCGCCAGAATTTCCCAGTAATTTCCTTGAGCtttacatatttgaaaataatccTCCTGGATCCTCAATATTCTCAGTGAGAGCATCGGACAGAGAcgtaaatgaaaatgctttggTATCTTATCAGATAAACAGAGGTGTTGGGACACAGAACGAGATAACCTCATTCTTGAATATAAATTCAGAAACAGGGGTTATTCATTCCCTTAAAAGTTTTGATTTCGAAGCAATTAAAAAGTTCCAGTTCCACGTCCTCGCCACAGACTCTGGAGCTCCGTCTCTGAGCAGTAACGTGACAGTGAACGAGGAGAGAGTCTGGGGAGGTAAGAGCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215838 lncRNA downstream 90773 13062086 ~ 13062733 (-) True G146155
TU215836 lncRNA downstream 91884 13060420 ~ 13061622 (-) True G146153
TU215834 lncRNA downstream 93477 13059731 ~ 13060029 (-) True G146151
TU215833 lncRNA downstream 98332 13054953 ~ 13055174 (-) True G146150
TU215828 lncRNA downstream 103644 13049324 ~ 13049862 (-) True G146145
TU216020 lncRNA upstream 428978 13584454 ~ 13584797 (-) True G146284
TU216051 lncRNA upstream 527561 13683037 ~ 13685204 (-) True G146312
TU216135 lncRNA upstream 643860 13799336 ~ 13799571 (-) True G146373
TU216140 lncRNA upstream 663628 13819104 ~ 13823309 (-) True G146378
TU216310 lncRNA upstream 929030 14084506 ~ 14088182 (-) True G146468
XM_043220693.1 mRNA downstream 505 13150883 ~ 13153001 (-) True LOC122326019
XM_043220690.1 mRNA downstream 51985 13100116 ~ 13101521 (-) True LOC122326016
XM_043222043.1 mRNA downstream 208538 12900298 ~ 12944968 (-) False kif4
XM_043222044.1 mRNA downstream 208538 12900298 ~ 12944968 (-) False kif4
XM_043222042.1 mRNA downstream 208538 12900298 ~ 12944968 (-) True kif4
XM_043221697.1 mRNA upstream 87851 13243327 ~ 13245313 (-) True mrpl22
XM_043222132.1 mRNA upstream 103717 13259193 ~ 13263225 (-) True cnot8
XM_043221415.1 mRNA upstream 108098 13263574 ~ 13299796 (-) True wwc1
XM_043221947.1 mRNA upstream 149184 13304660 ~ 13306893 (-) True nop16
XM_043220894.1 mRNA upstream 200704 13356180 ~ 13418283 (-) True dbn1
TU215846 other downstream 52263 13100190 ~ 13101243 (-) False LOC122326016
TU215845 other downstream 52430 13100190 ~ 13101076 (-) False LOC122326016
TU215842 other downstream 70012 13083124 ~ 13083494 (-) True G146159
TU215551 other downstream 777961 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 840634 12312799 ~ 12312872 (-) True LOC122327024
XR_006247558.1 other upstream 289602 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 710939 13866415 ~ 13867613 (-) True LOC122326201
TU216432 other upstream 1063135 14218611 ~ 14222673 (-) False dynll2b
XR_006247436.1 other upstream 1067667 14223143 ~ 14227266 (-) False srsf1b
TU216464 other upstream 1104209 14259685 ~ 14263667 (-) True G146556

Expression Profile