cnot8 (cnot8,LOC107728764,LOC107587194)


Basic Information

Item Value
gene id cnot8
gene name cnot8,LOC107728764,LOC107587194
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13259193 ~ 13263225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222132.1
GTTTTGGCGGGTGTTTTCCCACAATCCCGCAGGACCGGAAGCAGCGCGCTGTGTGTTTAGAGTCGCTGCTAGCTGTCCAGCTGCACAGCGGCTTTACATCTACATATAACGACTATACTCGTGCCAGAGTTTCTTTTGCCTGTGAGAGCTTCAGAATCGCTGGGTTACTAGGTTAGTTCCTCagccttcatcatcatcatgccAGCCGCACTTGCAGATACCAGTCAGATTATCTGTGAGGTCTGGGCCAGCAATGTGGAGGAGGAGATGAGGAAGATACGACAGATCATTCAAAGTTACAACTACATTGCCATGGACACTGAGTTTCCCGGTGTGGTGGTTCGTCCCATTGGAGAGTTCCGTAGTACTGTTGACTATCAGTATCAGCTCCTGAGGTGCAATGTGGACCTTTTAAAAATCATCCAGCTTGGCTTGACGTTTATGAATGAAGATGGAGACTACCCACCTGGAACAACAACGTGGCAGTTTAACTTCAAGTTTAATCTGACAGAGGACATGTACTCACAGGACTCCATAGATCTCCTTCAGAACTCTGGGCTACAGTTTAAAAAGCACGAGGAGGAGGGCATCGACACACTCTACTTCGCAGAGCTCCTCATGACATCAGGCCTTGTGCTTTGTGAAAATGTCAAGTGGCTTTCGTTTCACAGTGGGTATGATTTTGGTTACCTGGTGAAGCTGCTCACAGATTCTCGGTTGCCAGAAGAAGAACACGAGTTCTTTCAGATCCTAAATCTTTTCTTCCCAGCCATTTATGACGTCAAATATCTTATGAAGAGCTGCAAAAACCTTAAGGGTGGACTTCAGGAGGTGGCAGACCAGCTGGAGCTAAAAAGGATCGGCAGACAGCATCAGGCTGGCTCAGACTCGTTGCTCACAGGAATGGCTTTCTTCCGCATGAAAGAGttgttTTTTGAAGACAATATTGACGATGCCAAGTACTGTGGGCGGCTCTATGGTCTGGGATCCGGTTCTTCTCAAAGTCAGAATGGAATCTCCAACTCCTCGCAGGAGGAAACCAACAACAAGCACTGACCAAAATCTAGTGGATGATGCACTTGTTTTAATCCCACCCAGCAGATATTGTTCTTTACTGTTCTTTACAAAGAtgatttcaaatgattcatgCATTCTTAAAGGGACATTGGGAAATGCAAACAAGCTAATCTCAGATTCTGTTCTGCTCTGTAGTCCGTCATATTGCAACGTTCCAGGACTCCAGATCCTATTTCTTCCATCAGCTGAGAATTGAaaattttatcttgttttacagtattaaaaacaCCATTGTTTTAAGCATGGGACCAGCGCTTGTGTATCTTATGGCTTACAAGACTCCAGGCATTTTAATATACTCAGTcctttttagaaatgttttgatattttctaGAAAGGCTCAAGACTTCATTACTGAGATAAGAGGAAATGCCCTCTCACTATTGGTACACACGATtgtggggttgtttttaaaatatgccagcatgtatattaaaattgaaactttcaaaacaaactgctatctttaagaatttttttctgTAAGGAATACATTTTAGATTCAGGTTTGGGGCATCTTTGGGAACATGAGTCCACTGGTCCTGTgtaacagttttaaatgtgttcgTCTCACAATCTTGCCTGTTTGTGGTACGTGTTTTTATTGTATCTGTTGTTTGAGGCagttatgtattaaaatgttttctatcgCTAAA

Function

symbol description
cnot8 Predicted to enable poly(A)-specific ribonuclease activity. Acts upstream of or within neuron development. Predicted to be located in nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Orthologous to human CNOT8 (CCR4-NOT transcription complex subunit 8).

NR:

description
CCR4-NOT transcription complex subunit 8-like isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12581 CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222132.1 True 1733 mRNA 0.43 7 13259193 13263225

Neighbor

gene id symbol gene type direction distance location
mrpl22 mrpl22 coding downstream 13880 13243327 ~ 13245313 (-)
LOC122326020 LOC107754528,LOC107655654,LOC107596386 coding downstream 103717 13153506 ~ 13155476 (-)
LOC122326019 LOC107754526 coding downstream 106192 13150883 ~ 13153001 (-)
kif4 kif4,kif4a,LOC107588748,LOC108278814,LOC107758730,LOC107705946 coding downstream 314225 12900298 ~ 12944968 (-)
plrdgb plrdgb,pitpnm3,LOC107718051,LOC107571470,LOC108279208 coding downstream 372796 12772392 ~ 12886397 (-)
wwc1 wwc1,LOC107561708,LOC107732322,LOC107728763,LOC107692792,LOC107587260,LOC107676440 coding upstream 349 13263574 ~ 13299796 (-)
nop16 nop16,LOC107732324,LOC107587288 coding upstream 41435 13304660 ~ 13306893 (-)
dbn1 dbn1,LOC107732329,LOC107692779,LOC107707127,LOC107587196 coding upstream 92955 13356180 ~ 13418283 (-)
zgc:77151 zgc:77151,LOC107581964,LOC107692781,LOC107707128,LOC107697371,LOC107587198,LOC107732308 coding upstream 158949 13422174 ~ 13435322 (-)
uimc1 LOC107732339,LOC107692782,LOC107582006 coding upstream 177389 13440614 ~ 13449520 (-)
G146155 NA non-coding downstream 196460 13062086 ~ 13062733 (-)
G146153 NA non-coding downstream 197571 13060420 ~ 13061622 (-)
G146151 NA non-coding downstream 199164 13059731 ~ 13060029 (-)
G146150 NA non-coding downstream 204019 13054953 ~ 13055174 (-)
G146145 NA non-coding downstream 209331 13049324 ~ 13049862 (-)
G146284 NA non-coding upstream 321229 13584454 ~ 13584797 (-)
G146312 NA non-coding upstream 419812 13683037 ~ 13685204 (-)
G146373 NA non-coding upstream 536111 13799336 ~ 13799571 (-)
G146378 LOC107675202,LOC107581945,LOC107587211,LOC107697354,LOC107726795 non-coding upstream 555879 13819104 ~ 13823309 (-)
G146468 NA non-coding upstream 821281 14084506 ~ 14088182 (-)
LOC122326016 NA other downstream 157672 13100116 ~ 13101521 (-)
G146159 NA other downstream 175699 13083124 ~ 13083494 (-)
LOC122326748 LOC107739910 other downstream 776029 12482213 ~ 12483164 (-)
G145910 NA other downstream 883648 12374846 ~ 12375545 (-)
LOC122326615 LOC101885612 other downstream 1097526 12158672 ~ 12161667 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 603190 13866415 ~ 13867643 (-)
LOC122326208 NA other upstream 869029 14132254 ~ 14139158 (-)
dynll2b dynll2a,LOC107554284 other upstream 955382 14218607 ~ 14222690 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other upstream 959918 14223143 ~ 14227266 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other upstream 996460 14259685 ~ 14263667 (-)

Expression


Co-expression Network