LOC122326020 (LOC107754528,LOC107655654,LOC107596386)


Basic Information

Item Value
gene id LOC122326020
gene name LOC107754528,LOC107655654,LOC107596386
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13153506 ~ 13155476 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220694.1
ACCATTCAGTTCAACCGTGACAGCGTCTGACGAGCATATCGCGAGAAGCGGGAATAGAAAACGCTCTATAATGTTAtcgattttatttaatcaagaaTGTTGCATCTGGGAATAGGCAGTTTCCACTGAACACTATCGTTACTTGCTTTAAGCTGTTTGAAAGGAATCCTTAACGATGGATAAACAAAGGCGCGGATGGGAAAGCTGGTGGATGGCTTCGTGTTTCTCCTTTCTTCTCTGCTTCGGACCGCAGGTTTCAGCTCAGATAAGATACACTGTTCCAGAGGAAATGAAAGAGGGATCTGTTGTGGGGAATATTGCTAAAGATCTTGGACTTGACGTGAGTACCCTGATCGACAGACGGTTCCGTATAGTCTCTGGTTCTAAAGACGCGTTTTTCCAGCTAAACCAGAACAATGGCGAGTTGTATATTCATAGAAGCATAGACAGAGAGCAGCTCTGTGAAGGGAACGGTGCATGCGTAGTAAACCTAAAAACCGCGGTCGAAAATCCTTTAGAAATCCACTACGTGGCTGTAGAAATAACAGACATAAATGACAACCGTCCTAGTTTTTCTGAACAGAATCAGCATCTCGAGATCGCAGAACACACCCCTATAGGAACGAGCTTCCAGCTGCACGCAGCGCGAGACCAGGATGCCTCGCCGTATTCTGTTCGTTTGTATAAACTGAGTCAGGATGAAAATTTCGAGATCGACATCAGAAACAGCGATGAGGAAAAGATCCCCTTTTTAGTGCTGAAAAAACCACTCGATCGTGAACGTAAGTCGGAGCACCTGCTCATTTTAAAAGCCCTCGACGGTGGGAACCCTCCAAAATCGGGGACCCTTAACATCACCGTGACTGTGTTGGATATTAACGACAATCGCCCCGTGTTCACTCAAGACACTTATTCTGTCAGTTTACAGGAAAACTCCCCAGTTGGGACGactgtgattaaaataaaagctactgATAGCGACGAGGGTCCAAACAGTGACGTTGAATATTCGCTTGGTAAAACCTTAAAGCGCAAAGTTTATGAGGTGTTTCAGTTGGATCGCATTACAGGCGAAATAAAGGTTAAAGGCGAGATAGACTTTGAGGACACAGACGTTTACAAACTTGACGTTGAGGCTTCAGATAAAGGTCAGCCTCCATGGACAGTTCAAGGTCgtgttattataaaaatacaagatATAAACGATAATAAGCCTGAAATTGAGCTAACTTCATTATCTAATATCGTTGCTGAAGACTCTCAACCTGGAACAGTAATTGCGTTGATTAGTGTCACAGATAAAGACTCCGGTGTTAATGGTAAAGTTGTATGTAGTCTCTCAGACAATGTTCCTTTCGAGCTGAAACCCTCTTTTCAAGATAATATGTACTCGCTGGTGACAAAGGGGCGTTTGGATCGTGAACTTGTGCCCCATTATGATATCAGTGTCACAGCAGCAGATTTAGGTCAGCCGTCCTTATCATCGATCAAAACCTTAAGCATCCAAGTAGCAGATGTGAATGACAACCCGCCAGAATTTCCCAGTAATTTCCTTGAGCtttacatatttgaaaataatccTCCTGGATCCTCAATATTCTCAGTGAGAGCATCGGACAGAGAcgtaaatgaaaatgctttggTATCTTATCAGATAAACAGAGGTGTTGGGACACAGAACGAGATAACCTCATTCTTGAATATAAATTCAGAAACAGGGGTTATTCATTCCCTTAAAAGTTTTGATTTCGAAGCAATTAAAAAGTTCCAGTTCCACGTCCTCGCCACAGACTCTGGAGCTCCGTCTCTGAGCAGTAACGTGACAGTGAACGAGGAGAGAGTCTGGGGAGGTAAGAGCATGTGA

Function

NR:

description
PREDICTED: protocadherin alpha-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220694.1 True 1864 mRNA 0.43 2 13153506 13155476

Neighbor

gene id symbol gene type direction distance location
LOC122326019 LOC107754526 coding downstream 505 13150883 ~ 13153001 (-)
kif4 kif4,kif4a,LOC107588748,LOC108278814,LOC107758730,LOC107705946 coding downstream 208538 12900298 ~ 12944968 (-)
plrdgb plrdgb,pitpnm3,LOC107718051,LOC107571470,LOC108279208 coding downstream 267109 12772392 ~ 12886397 (-)
slc47a1 slc47a1,LOC107699950,LOC107718054,LOC107571469 coding downstream 390796 12742355 ~ 12762710 (-)
serpinf2a serpinf2a,LOC107718058,LOC107699948,LOC107599232,LOC107723708,LOC107684202,LOC107588752 coding downstream 510670 12638695 ~ 12642836 (-)
mrpl22 mrpl22 coding upstream 87851 13243327 ~ 13245313 (-)
cnot8 cnot8,LOC107728764,LOC107587194 coding upstream 103717 13259193 ~ 13263225 (-)
wwc1 wwc1,LOC107561708,LOC107732322,LOC107728763,LOC107692792,LOC107587260,LOC107676440 coding upstream 108098 13263574 ~ 13299796 (-)
nop16 nop16,LOC107732324,LOC107587288 coding upstream 149184 13304660 ~ 13306893 (-)
dbn1 dbn1,LOC107732329,LOC107692779,LOC107707127,LOC107587196 coding upstream 200704 13356180 ~ 13418283 (-)
G146155 NA non-coding downstream 90773 13062086 ~ 13062733 (-)
G146153 NA non-coding downstream 91884 13060420 ~ 13061622 (-)
G146151 NA non-coding downstream 93477 13059731 ~ 13060029 (-)
G146150 NA non-coding downstream 98332 13054953 ~ 13055174 (-)
G146145 NA non-coding downstream 103644 13049324 ~ 13049862 (-)
G146284 NA non-coding upstream 428978 13584454 ~ 13584797 (-)
G146312 NA non-coding upstream 527561 13683037 ~ 13685204 (-)
G146373 NA non-coding upstream 643860 13799336 ~ 13799571 (-)
G146378 LOC107675202,LOC107581945,LOC107587211,LOC107697354,LOC107726795 non-coding upstream 663628 13819104 ~ 13823309 (-)
G146468 NA non-coding upstream 929030 14084506 ~ 14088182 (-)
LOC122326016 NA other downstream 51985 13100116 ~ 13101521 (-)
G146159 NA other downstream 70012 13083124 ~ 13083494 (-)
LOC122326748 LOC107739910 other downstream 670342 12482213 ~ 12483164 (-)
G145910 NA other downstream 777961 12374846 ~ 12375545 (-)
LOC122326615 LOC101885612 other downstream 991839 12158672 ~ 12161667 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 710939 13866415 ~ 13867643 (-)
LOC122326208 NA other upstream 976778 14132254 ~ 14139158 (-)
dynll2b dynll2a,LOC107554284 other upstream 1063131 14218607 ~ 14222690 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other upstream 1067667 14223143 ~ 14227266 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other upstream 1104209 14259685 ~ 14263667 (-)

Expression


Co-expression Network