RNA id: TU215834


Basic Information

Item Value
RNA id TU215834
length 299
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G146151
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13059731 ~ 13060029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCATTCCAAATCTTTTGAGAATATGGTTCATCAAGAGGTAGGCTGTTGTTTCTGCCGTGTCATTCGGAGCTGGGAGGCACTCTATCCACTTTGTGAATTCGCAGACCACGTTGAGGAAGTACTTGTTACCTCGTGTTGACCGTGGCAGGGGTCCTACCCAGTCTATTTGGAGGTCTGACCATGGGAAGGCCATTCCTTTCCTTTGCAGTGGTGCGCGGTGATTTGCATTCGCCGGTTGAAACTGGCAACAGACCAGGCATCCTTTCACGTATTCCGCCACGTCTTgctgcatgccag

Function

GO:

id name namespace
GO:0005216 ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215833 lncRNA downstream 4557 13054953 ~ 13055174 (-) True G146150
TU215828 lncRNA downstream 9869 13049324 ~ 13049862 (-) True G146145
TU215825 lncRNA downstream 11922 13047574 ~ 13047809 (-) True G146142
TU215822 lncRNA downstream 17888 13041139 ~ 13041843 (-) True G146139
TU215807 lncRNA downstream 28581 13030930 ~ 13031150 (-) True G146132
TU215836 lncRNA upstream 391 13060420 ~ 13061622 (-) True G146153
TU215838 lncRNA upstream 2057 13062086 ~ 13062733 (-) True G146155
TU216020 lncRNA upstream 524425 13584454 ~ 13584797 (-) True G146284
TU216051 lncRNA upstream 623008 13683037 ~ 13685204 (-) True G146312
TU216135 lncRNA upstream 739307 13799336 ~ 13799571 (-) True G146373
XM_043222043.1 mRNA downstream 114763 12900298 ~ 12944968 (-) False kif4
XM_043222044.1 mRNA downstream 114763 12900298 ~ 12944968 (-) False kif4
XM_043222042.1 mRNA downstream 114763 12900298 ~ 12944968 (-) True kif4
XM_043221666.1 mRNA downstream 201279 12772392 ~ 12858452 (-) False plrdgb
XM_043220690.1 mRNA upstream 40087 13100116 ~ 13101521 (-) True LOC122326016
XM_043220693.1 mRNA upstream 90854 13150883 ~ 13153001 (-) True LOC122326019
XM_043220694.1 mRNA upstream 93477 13153506 ~ 13155476 (-) True LOC122326020
XM_043221697.1 mRNA upstream 183298 13243327 ~ 13245313 (-) True mrpl22
XM_043222132.1 mRNA upstream 199164 13259193 ~ 13263225 (-) True cnot8
TU215551 other downstream 684186 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 746859 12312799 ~ 12312872 (-) True LOC122327024
XR_006247556.1 other downstream 747083 12312575 ~ 12312648 (-) True LOC122327023
XR_006247555.1 other downstream 747305 12312353 ~ 12312426 (-) True LOC122327022
XR_006247554.1 other downstream 747528 12312130 ~ 12312203 (-) True LOC122327021
TU215842 other upstream 23095 13083124 ~ 13083494 (-) True G146159
TU215845 other upstream 40161 13100190 ~ 13101076 (-) False LOC122326016
TU215846 other upstream 40161 13100190 ~ 13101243 (-) False LOC122326016
XR_006247558.1 other upstream 385049 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 806386 13866415 ~ 13867613 (-) True LOC122326201

Expression Profile