RNA id: XR_006247555.1



Basic Information


Item Value
RNA id XR_006247555.1
length 74
RNA type snoRNA
GC content 0.42
exon number 1
gene id LOC122327022
representative True

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12312353 ~ 12312426 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTATGATGAAACCTAAACTTAAATAGCTGGAATTACCGTCAGATGGATCAGTGGCGATGATCGGTTTTCTGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215511 lncRNA downstream 88773 12218058 ~ 12223580 (-) True G145881
TU215496 lncRNA downstream 118941 12193086 ~ 12193412 (-) True G145874
TU215449 lncRNA downstream 128284 12180518 ~ 12184069 (-) True G145837
TU215446 lncRNA downstream 133308 12177303 ~ 12179045 (-) True G145835
TU215438 lncRNA downstream 154409 12155330 ~ 12157944 (-) False G145829
TU215545 lncRNA upstream 3869 12316295 ~ 12316994 (-) True G145905
TU215552 lncRNA upstream 95207 12407633 ~ 12408094 (-) True G145911
TU215554 lncRNA upstream 98741 12411167 ~ 12411433 (-) True G145913
TU215563 lncRNA upstream 105731 12418157 ~ 12418504 (-) True G145922
TU215581 lncRNA upstream 139674 12452100 ~ 12452655 (-) True G145940
XM_043221369.1 mRNA downstream 6102 12281617 ~ 12306251 (-) False ssh2b
XM_043221368.1 mRNA downstream 14581 12281617 ~ 12297772 (-) True ssh2b
XM_043221733.1 mRNA downstream 32246 12267276 ~ 12280107 (-) True coro6
XM_043221731.1 mRNA downstream 45292 12262664 ~ 12267061 (-) True LOC122326656
XM_043221522.1 mRNA downstream 76168 12228678 ~ 12236185 (-) True pdk3b
XM_043221899.1 mRNA upstream 31835 12344261 ~ 12345202 (-) True LOC122326761
XM_043221900.1 mRNA upstream 44940 12357366 ~ 12358304 (-) True LOC122326762
XM_043221896.1 mRNA upstream 52550 12364976 ~ 12368346 (-) True LOC122326760
XM_043221897.1 mRNA upstream 54979 12367405 ~ 12368346 (-) False LOC122326760
XM_043221886.1 mRNA upstream 73098 12385524 ~ 12387888 (-) False LOC122326751
XR_006247554.1 other downstream 150 12312130 ~ 12312203 (-) True LOC122327021
unassigned_transcript_2532 other downstream 126752 12185530 ~ 12185601 (-) True trnac-gca_120
TU215439 other downstream 150773 12158672 ~ 12161580 (-) False LOC122326615
TU215321 other downstream 499770 11807360 ~ 11812583 (-) True LOC122326065
XR_006247556.1 other upstream 149 12312575 ~ 12312648 (-) True LOC122327023
XR_006247557.1 other upstream 373 12312799 ~ 12312872 (-) True LOC122327024
TU215551 other upstream 62420 12374846 ~ 12375545 (-) True G145910
TU215842 other upstream 770698 13083124 ~ 13083494 (-) True G146159
TU215845 other upstream 787764 13100190 ~ 13101076 (-) False LOC122326016

Expression Profile