trnac-gca_120


Basic Information

Item Value
gene id trnac-gca_120
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12185530 ~ 12185601 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2532
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccggttcaaatccgggtgccccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2532 True 72 tRNA 0.57 1 12185530 12185601

Neighbor

gene id symbol gene type direction distance location
rbm22 rbm22,LOC107689188,LOC107685490,LOC107590066,LOC107748105 coding downstream 105958 12075451 ~ 12079572 (-)
slc34a1b LOC107748116,LOC107588795,LOC107685502 coding downstream 149135 12026517 ~ 12036395 (-)
adamts2a adamts2,LOC107689184,LOC107756799,LOC107667595,LOC107566216,LOC107590100,LOC107749938 coding downstream 231500 11896253 ~ 11954030 (-)
si:dkeyp-72g9.4 si:dkeyp-72g9.4,LOC107689183,LOC107756801,LOC107749913,LOC107566215,LOC107590060,LOC107667601 coding downstream 296671 11883367 ~ 11888859 (-)
kiaa1191 kiaa1191,zgc:123105,LOC107689181,LOC107756802,LOC107749914 coding downstream 304277 11873428 ~ 11881253 (-)
ccdc82 ccdc82,LOC107590081,LOC107689195,LOC107721402,LOC107748113,LOC107588764,LOC107685481 coding upstream 2322 12187923 ~ 12192887 (-)
LOC122326744 spag16,LOC107590107,LOC107685498,LOC107748120 coding upstream 10189 12195790 ~ 12197893 (-)
pdk3b LOC107588762,LOC107590079,LOC107685479,LOC108431348,LOC108278474 coding upstream 43077 12228678 ~ 12236185 (-)
LOC122326656 LOC107689200,LOC107590078,LOC107721414 coding upstream 77063 12262664 ~ 12267061 (-)
coro6 coro6,LOC107685477,LOC107588759,LOC107721413,LOC107728955,LOC107590076,LOC107689201 coding upstream 81675 12267276 ~ 12280107 (-)
G145837 LOC107590070,LOC107721412,LOC107685485,LOC107588766,LOC107689194 non-coding downstream 1461 12180518 ~ 12184069 (-)
G145835 NA non-coding downstream 6485 12177303 ~ 12179045 (-)
G145829 LOC107590069,LOC107689193 non-coding downstream 27586 12155330 ~ 12157944 (-)
G145831 NA non-coding downstream 30776 12151803 ~ 12154754 (-)
G145821 NA non-coding downstream 36094 12135347 ~ 12149436 (-)
G145874 NA non-coding upstream 7485 12193086 ~ 12193412 (-)
G145881 NA non-coding upstream 32457 12218058 ~ 12223580 (-)
G145879 NA non-coding upstream 58558 12244159 ~ 12318262 (-)
LOC122326242 NA non-coding upstream 126321 12311922 ~ 12313144 (-)
LOC122327021 NA non-coding upstream 126529 12312130 ~ 12312203 (-)
LOC122326615 LOC101885612 other downstream 23863 12158672 ~ 12161667 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other downstream 127923 12012211 ~ 12057607 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other downstream 200458 11972216 ~ 11985072 (-)
LOC122326065 clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918 other downstream 372947 11806824 ~ 11812583 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other downstream 1237162 10911230 ~ 10948368 (-)
G145910 NA other upstream 189245 12374846 ~ 12375545 (-)
LOC122326748 LOC107739910 other upstream 296612 12482213 ~ 12483164 (-)
G146159 NA other upstream 897523 13083124 ~ 13083494 (-)
LOC122326016 NA other upstream 914515 13100116 ~ 13101521 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 1680814 13866415 ~ 13867643 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnac-gca-163 NA coding NC_048593.1 CM023247.2 32246090 ~ 32246161 (+)
eurasian perch (Perca fluviatilis) trnac-gca_34 NA coding NC_053133.1 CM020930.1 10232486 ~ 10232557 (+)
striped catfish (Pangasianodon hypophthalmus) trnac-gca_25 NA coding NC_047613.1 CM018559.1 7589368 ~ 7589439 (+)
tiger barb (Puntius tetrazona) trnam-cau_83 NA misc NC_056707.1 CM032076.1 5439021 ~ 5439092 (+)
mexican tetra (Astyanax mexicanus) trnac-gca_25 NA coding NW_019172608.1 APWO02002206.1 218920 ~ 218991 (+)
mexican tetra (Astyanax mexicanus) trnac-gca_39 NA coding NW_019172608.1 APWO02002206.1 231198 ~ 231269 (+)