trnac-gca_39


Basic Information

Item Value
gene id trnac-gca_39
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172608.1
NCBI id APWO02002206.1
chromosome length 232625
location 231198 ~ 231269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnac-gca_39
GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca_39 True 72 tRNA 0.57 1 231198 231269

Neighbor

gene id symbol gene type direction distance location
trnac-gca_38 NA coding upstream 504 230623 ~ 230694 (+)
trnac-gca_37 NA coding upstream 1250 229877 ~ 229948 (+)
trnac-gca_36 NA coding upstream 1650 229477 ~ 229548 (+)
trnac-gca_35 NA coding upstream 2595 228532 ~ 228603 (+)
trnac-gca_34 NA coding upstream 3127 228000 ~ 228071 (+)
G285052 NA non-coding upstream 96445 132771 ~ 134753 (+)
G285049 NA non-coding upstream 112565 117555 ~ 118633 (+)
G285043 NA non-coding upstream 163314 65790 ~ 67884 (+)
G285037 NA non-coding upstream 186577 43647 ~ 44621 (+)
LOC103033900 NA other upstream 100105 89227 ~ 131093 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnac-gca-163 NA coding NC_048593.1 CM023247.2 32246090 ~ 32246161 (+)
eurasian perch (Perca fluviatilis) trnac-gca_34 NA coding NC_053133.1 CM020930.1 10232486 ~ 10232557 (+)
striped catfish (Pangasianodon hypophthalmus) trnac-gca_25 NA coding NC_047613.1 CM018559.1 7589368 ~ 7589439 (+)
tiger barb (Puntius tetrazona) trnam-cau_83 NA misc NC_056707.1 CM032076.1 5439021 ~ 5439092 (+)
tiger barb (Puntius tetrazona) trnac-gca_120 NA coding NC_056719.1 CM032088.1 12185530 ~ 12185601 (-)
mexican tetra (Astyanax mexicanus) trnac-gca_25 NA coding NW_019172608.1 APWO02002206.1 218920 ~ 218991 (+)