LOC122326065 (clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918)


Basic Information

Item Value
gene id LOC122326065
gene name clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11806824 ~ 11812583 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU215321
ACGAGCCGTGAGTGTAAAGCGGAAGTCATAAAGGGTGGTGGAGCTCAAGTCTGGAAAGCACAGTGTCTTATTTTACGACTTTAAGTAACGGGTGAAAGCGGTCAGATGCGGCGTTCTAAGCGGATGCGGTCGCCGGATGGCTGGATCGCGGAGTACAGTTGGGAGGAGAGAGTGGAGGTGCACAAGAGACCGAAGCGCAGCTCTCGCAGCGGGGAAAGAGAGCGGCAGCCCGGCAGAACCCATCACTATAAGACATACGaaagGTGTCACATTAGCTCAAAGAGGCTGGAGTGCAGAGAGCGCAGGGCCAGAGAGGCCAGTCTTGAGCATGGAGGTTTTAAGGGTCGCGTGGACCCGGTCCGGGAAACGGCGAGGGAGAAAGATGAGAACCATTACAGCCAGTCGTCCCGCGCATAGAGGACGAAGTCGACGGAGCAGCAGAGAGCGCCAGCGATCACGTCATCCCAGTCCCGCTCAGACTCGAGAAGTCATCGCAGGAAAAGAACCAAGAGTAttgaggatgatgaggagggTCACCTGGTCTATCACAATGGAGACATGCTAAGAGCAAGATATGAGATTATAGGGACTCTGGGCGAAGGAGCCTTTGGAAAAGTAGTAGAGTGCCTTGACCGTTCAAAAAGCAATGCAAGAGTTGCGCTGAAGATCATCAAAAATATCGAGCGCTATCGTGAGGCAGCCTTGTCAGAGGTTGATGTGCTTGAGCGGATAAACTCGCTTGATGAGGAAAAGAGATTTGCTTGTGTCCGGATGCTGGACTGGTTCGATCACCACGGCCACATCTGCATAGTGTTTGAGCTGCTGGGACTGAGCACGTATGACTTCCTGAAGGAGAATGGATTCATGCCCTTCTCGTTGAACCAGATCAGATTCATGGCAGACCAGATATTCAGAGCCGTGCAGTTTCTGCATCGAAATAAGTTGACTCACACTGACCTCAAGCCTGAAAACATTCTGTTTGTGGACTCCAACTATGACATCAAGTACAACTCCAAAATGAAGCGAGACGAGAGGACCTTAAAGAGGCTGGATGTGAAAGTTGTTGACTTTGGCAATGCTACCCATGACCACGAGCACCACACCTCTGTGGTGTCCACACGTCACTACAGGGCTCCAGAAGTTATATTAGAACTTGGCTGGAACCAGGCGTGTGACGTGTGGAGTTTGGGCTGTATCCTGATTGAGTTCTATCTGGGGTTAACCTTATTTCAGACTCACGACAGTAAAGAGCATCTGGCGATGATGGAGAGGGTTTTAGGACCCATACCAGCATACCTGCTTCAGAAAACCAGGAAGCGGCGTTATGTGCATCATGACAAATTGGACTGGGATGAGCACAGCTCCGC
>TU215322
ACGAGCCGTGAGTGTAAAGCGGAAGTCATAAAGGGTGGTGGAGCTCAAGTCTGGAAAGCACAGTGTCTTATTTTACGACTTTAAGTAACGGGTGAAAGCGGTCAGATGCGGCGTTCTAAGCGGATGCGGTCGCCGGATGGCTGGATCGCGGAGTACAGTTGGGAGGAGAGAGTGGAGGTGCACAAGAGACCGAAGCGCAGCTCTCGCAGCGGGGAAAGAGAGCGGCAGCCCGGCAGAACCCATCACTATAAGACATACGaaagGTGTCACATTAGCTCAAAGAGGCTGGAGTGCAGAGAGCGCAGGGCCAGAGAGGCCAGTCTTGAGCATGGAGGTTTTAAGGGTCGCGTGGACCCGGTCCGGGAAACGGCGAGGGAGAAAGATGAGAACCATTACAGCCAGTCGTCCCGCGCATAGAGGACGAAGTCGACGGAGCAGCAGAGAGCGCCAGCGATCACGTCATCCCAGTCCCGCTCAGACTCGATGAGATTATAGGGACTCTGGGCGAAGGAGCCTTTGGAAAAGTAGTAGAGTGCCTTGACCGTTCAAAAAGCAATGCAAGAGTTGCGCTGAAGATCATCAAAAATATCGAGCGCTATCGTGAGGCAGCCTTGTCAGAGGTTGATGTGCTTGAGCGGATAAACTCGCTTGATGAGGAAAAGAGATTTGCTTGTGTCCGGATGCTGGACTGGTTCGATCACCACGGCCACATCTGCATAGTGTTTGAGCTGCTGGGACTGAGCACGTATGACTTCCTGAAGGAGAATGGATTCATGCCCTTCTCGTTGAACCAGATCAGATTCATGGCAGACCAGATATTCAGAGCCGTGCAGTTTCTGCATCGAAATAAGTTGACTCACACTGACCTCAAGCCTGAAAACATTCTGTTTGTGGACTCCAACTATGACATCAAGTACAACTCCAAAATGAAGCGAGACGAGAGGACCTTAAAGAGGCTGGATGTGAAAGTTGTTGACTTTGGCAATGCTACCCATGACCACGAGCACCACACCTCTGTGGTGTCCACACGTCACTACAGGGCTCCAGAAGTTATATTAGAACTTGGCTGGAACCAGGCGTGTGACGTGTGGAGTTTGGGCTGTATCCTGATTGAGTTCTATCTGGGGTTAACCTTATTTCAGACTCACGACAGTAAAGAGCATCTGGCGATGATGGAGAGGGTTTTAGGACCCATACCAGCATACCTGCTTCAGAAAACCAGGAAGCGGCGTTATGTGCATCATGACAAATTGGACTGGGATGAGCACAGCTCCGC
>TU215325
ACGAGCCGTGAGTGTAAAGCGGAAGTCATAAAGGGTGGTGGAGCTCAAGTCTGGAAAGCACAGTGTCTTATTTTACGACTTTAAGTAACGGGTGAAAGCGGTCAGATGCGGCGTTCTAAGCGGATGCGGTCGCCGGATGGCTGGATCGCGGAGTACAGTTGGGAGGAGAGAGTGGAGGTGCACAAGAGACCGAAGCGCAGCTCTCGCAGCGGGGAAAGAGAGCGGCAGCCCGGCAGAACCCATCACTATAAGACATACGaaagGTGTCACATTAGCTCAAAGAGGCTGGAGTGCAGAGAGCGCAGGGCCAGAGAGGCCAGTCTTGAGCATGGAGGTTTTAAGGGTCGCGTGGACCCGGTCCGGGAAACGGCGAGGGAGAAAGATGAGAACCATTACAGCCAGTCGTCCCGCGCATAGAGGACGAAGTCGACGGAGCAGCAGAGAGCGCCAGCGATCACGTCATCCCAGTCCCGCTCAGACTCGGTAAACGATTTATCAATACAtcgattttctttcttttctttttttttacttcaactGATGTGTTTGTTAATGTTTCTGAAGTCCAGATTTACCTTAGAAACCATCTGCTCTAAACGCACAGTAAGGTGGTCAAGGAATCAGTTGTCTGATTCACTTGAACTTCACTCATTGGTTGCAGAAATGGCTATTTGTTGATTGCTTGAGGTCTTGAACAGAATTAGCTGTTCTTAAGTGCACTTCAAAGAAAGTTGTTTCCTGTCTGAAAATGTGTTGCCATGTCTTTCTTCTGTAACACACACTATGGTGGCCCTGTGCCGTTGTTGGCGATGAATTTGAATTTGCTGCTGCCGT
>XM_043220744.1
CAGACTCGAGAAGTCATCGCAGGAAAAGAACCAAGAGTAttgaggatgatgaggagggTCACCTGGTCTATCACAATGGAGACATGCTAAGAGCAAGATATGAGATTATAGGGACTCTGGGCGAAGGAGCCTTTGGAAAAGTAGTAGAGTGCCTTGACCGTTCAAAAAGCAATGCAAGAGTTGCGCTGAAGATCATCAAAAATATCGAGCGCTATCGTGAGGCAGCCTTGTCAGAGGTTGATGTGCTTGAGCGGATAAACTCGCTTGATGAGGAAAAGAGATTTGCTTGTGTCCGGATGCTGGACTGGTTCGATCACCACGGCCACATCTGCATAGTGTTTGAGCTGCTGGGACTGAGCACGTATGACTTCCTGAAGGAGAATGGATTCATGCCCTTCTCGTTGAACCAGATCAGATTCATGGCAGACCAGATATTCAGAGCCGTGCAGTTTCTGCATCGAAATAAGTTGACTCACACTGACCTCAAGCCTGAAAACATTCTGTTTGTGGACTCCAACTATGACATCAAGTACAACTCCAAAATGAAGCGAGACGAGAGGACCTTAAAGAGGCTGGATGTGAAAGTTGTTGACTTTGGCAATGCTACCCATGACCACGAGCACCACACCTCTGTGGTGTCCACACGTCACTACAGGGCTCCAGAAGTTATATTAGAACTTGGCTGGAACCAGGCGTGTGACGTGTGGAGTTTGGGCTGTATCCTGATTGAGTTCTATCTGGGGTTAACCTTATTTCAGACTCACGACAGTAAAGAGCATCTGGCGATGATGGAGAGGGTTTTAGGACCCATACCAGCATACCTGCTTCAGAAAACCAGGAAGCGGCGTTATGTGCATCATGACAAATTGGACTGGGATGAGCACAGCTCCGCGAGGAGATACGAGGAACACTGTAAACCTCTAAAGCAATACATGTCCTCTAACTCCGAGCACGAGCTGCTGTTTGACCTGCTGCACAAGATGATGGAGTATGATTCATCCAAACGAATCACCCTGGAGCAGGCCATTGGACATCCCTTTTTCAACCCGataagaaaagagagaaagtgactTGGAGGCTACACAAAATGAACCTTACTGCTCCCAGGGAGACTGCTGCTGACTGTATCAGTCTGCTTTAAGACTGCCTGCTTCATCACTTTTGTCCATATTTATTGTCAATTTGATTATATGGGCCAAATTTATCTGTACGTTTGGCAAATTAAACTTGAATGCGCTTTGAATACA

Function

symbol description
clk4b Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CLK1 (CDC like kinase 1) and CLK4 (CDC like kinase 4).

NR:

description
PREDICTED: dual specificity protein kinase CLK4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215321 True 1367 TUCP 0.51 12 11807360 11812583
TU215322 False 1276 TUCP 0.52 11 11807360 11812583
TU215325 False 834 TUCP 0.49 3 11809664 11812583
XM_043220744.1 False 1247 mRNA 0.46 13 11806824 11810022

Neighbor

gene id symbol gene type direction distance location
LOC122326908 clk4b,LOC107756806,LOC107673840,LOC107749918,LOC107570696,LOC107667599 coding downstream 173625 11627540 ~ 11633199 (-)
LOC122326002 LOC107673834,LOC107756807,LOC107590054,LOC107570695,LOC101886266,LOC107667430 coding downstream 180716 11547987 ~ 11626108 (-)
trnav-cac_11 NA coding downstream 259301 11547451 ~ 11547523 (-)
trnav-aac_28 NA coding downstream 259793 11546959 ~ 11547031 (-)
mat2b LOC107590055,LOC107756808,LOC107673835,LOC107749920,LOC107570697,LOC107667431 coding downstream 260580 11540592 ~ 11546244 (-)
mapk9 mapk9,LOC107756804,LOC107566214,LOC107673832,LOC107667593,LOC107590058 coding upstream 18577 11831160 ~ 11847343 (-)
gfpt2 gfpt2,LOC107756803,LOC107590059,LOC107749915,LOC107667598,LOC107566211 coding upstream 38927 11851510 ~ 11866992 (-)
kiaa1191 kiaa1191,zgc:123105,LOC107689181,LOC107756802,LOC107749914 coding upstream 60845 11873428 ~ 11881253 (-)
si:dkeyp-72g9.4 si:dkeyp-72g9.4,LOC107689183,LOC107756801,LOC107749913,LOC107566215,LOC107590060,LOC107667601 coding upstream 70784 11883367 ~ 11888859 (-)
adamts2a adamts2,LOC107689184,LOC107756799,LOC107667595,LOC107566216,LOC107590100,LOC107749938 coding upstream 83670 11896253 ~ 11954030 (-)
G145708 LOC107667428,LOC107756812,LOC107590098,LOC107673825 non-coding downstream 271278 11532458 ~ 11535546 (-)
G145666 NA non-coding downstream 670293 11135914 ~ 11136531 (-)
G145657 NA non-coding downstream 699458 11105913 ~ 11107366 (-)
G145559 NA non-coding downstream 879337 10923433 ~ 10927487 (-)
G145549 NA non-coding downstream 915672 10885344 ~ 10891152 (-)
G145781 adra2db,LOC107566213,LOC107667592,LOC107756796,LOC107590063,LOC107689214,LOC107749943 non-coding upstream 181965 11994548 ~ 11998276 (-)
G145821 NA non-coding upstream 322764 12135347 ~ 12149436 (-)
G145831 NA non-coding upstream 339220 12151803 ~ 12154754 (-)
G145829 LOC107590069,LOC107689193 non-coding upstream 342747 12155330 ~ 12157944 (-)
G145835 NA non-coding upstream 364720 12177303 ~ 12179045 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other downstream 858456 10911230 ~ 10948368 (-)
LOC122326213 NA other downstream 949396 10854666 ~ 10857428 (-)
prob1 LOC107673843,LOC107590111,LOC107733495,LOC107715308,LOC107557040 other downstream 1089664 10711570 ~ 10717160 (-)
LOC122326060 gria3,LOC107548214,LOC107559424,LOC107700029,LOC107715357,LOC107669376,LOC107568987,LOC106603380 other downstream 1673989 10107731 ~ 10132835 (-)
aipl1 aipl1,LOC107664920,LOC107585578,LOC107743670 other downstream 1795897 9882417 ~ 10010927 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other upstream 159633 11972216 ~ 11985072 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other upstream 199628 12012211 ~ 12057607 (-)
LOC122326615 LOC101885612 other upstream 346089 12158672 ~ 12161667 (-)
G145910 NA other upstream 562263 12374846 ~ 12375545 (-)
LOC122326748 LOC107739910 other upstream 669630 12482213 ~ 12483164 (-)

Expression


Co-expression Network