LOC122326002 (LOC107673834,LOC107756807,LOC107590054,LOC107570695,LOC101886266,LOC107667430)


Basic Information

Item Value
gene id LOC122326002
gene name LOC107673834,LOC107756807,LOC107590054,LOC107570695,LOC101886266,LOC107667430
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11547987 ~ 11626108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220676.1
cacacacatagtattTGCGCTCTGTCGTTTACATAGTTTTGTTGACGGCAGTTCAGCAGCGAAAAAGGGGCTGACTGGATACTCTGAGACACACTTCAGAGGGAAACAATTTAACCTGCGCTCGAGACGCAGACGGGCGCGCGACCGTCAGAAGTACAAGCTCTTTTCTAGTGTGCGTCACATCGTTGAGTCTCCTGTCAGCCGCAGTTACGCCAGAGCCATAAACGACACTGAAATAAAGGTCTTCAAGAGTCTCAAAAGAGGATTCGAGAACAAGGATAATATTTTAACCGTAATGCCAACAATGGTTTCAACTGGGGATTCAAAAGATGTGTCAGAGACATCACAGAGCAATGGACATCACACAACACAGATATTTCATTGTCTAACGACCCTCGTGTGTTTCATGTTGTCGGCGTCTTCGGTGGCAGTTTGTCTGTTAATGAACGTCAAAACATCTCATCTTGAGCGTAAAATTGAACTTCTAGAAACGGAGCGACTGTCTTTGATTCAACCTGTGCACGCCACACTGGATGCGCACGCGACTTTTCGGGATGCGATAGAGAAACTTGTGCAGGAGaaaatGAAAGAGGGAATGTCAAAAATTCGCACAGTTCGAGAAGCAGCGCAAGAGTGCTCGTGTCCTCCAGGTCCTCCAGGAAAACGTGGAAGAAAAGGCAACCCTGgAATTCCAGGTTCTCCAGGACGAGATGGCTACCCGGGTCCAATGGGTATGGATGGTAAACCTGGACCTCCAGGTCCAAACGGTAGCCAGGGAATGCCAGGACTAAAAGGAGATAAGGGTGATCAGGAGACATGGGTCCCAGGTCTGACAGGACCACCGGCCTACGCTGCCTCTGCAGGCCTGCTCAGTAATCAGATTCTCACGGTTAAGGGAGATCAAGGTCAGACTGGGCCTCCAGGTCCCCCAGGACCTCCAGGAACACCTGGTCCCAGAGGGCCTCCAGGAAACACAGGCAGAGATGGACCACAGGGCCACCCAGGAGAGCCGGGTCCTCCTGGAAAAGATGGAAATGAGGGACCAAGAGGGCCAACTGGCATGCAGgGAATGAATGGTGTCAACGGCATGCCTGGCCCACAGGGCCCTGCAGGGGACAAGGGTGATAAGGGTGCTCCAGGTACTGAAGGGAAGAGAGGGACTGATGGATCCCCTGGCATGAAGGGTGAAAAGGGGGATGGTGGAGAACCAGGAGCCCAGggaGAGAAAGGAGCTACTGGCTTCATAGAAAATGCTGATCTAGATGTTAGACTCAAAGCTCTACAGGGGCCTCCAGGACCTCCAGGAGCGCAAGGGCCAAAAGGGGAAACTGGCTTACCTGGGGCACCAGGATCTGAAGGAAAGCAGGGCCATAAGGGAGAGAGAGGTGATACGGGAGAGCCTGGAATGGCAGGAGTAAAGGGAGAAAAGGGGGAGATTGGACTGATAGGGCCTATAGGTGAAGCTGGGCAAAAGGGAGATAAAGGAGACTCTAGACTTGAGGACAATCTGGCCCAGATTATTTCTTTGCCCGGCCCACCAGGGCCACCTGGACCACCTGGGCCTGCCGGATATCATGGATTGCCTGGACCCAAGgGAGAGCCTGGTGAAGCAGTTAAAGGAGAAAAGGGTGATGCTGGAGAGAAAGGTCCACCCGGGCAGAGGGGTCTTCAAGGCTTTCCAGGGTCTAATGGCTTGGTAGGCCTTCCAGGTGCAAAAGGTGAAAAGGGGAAACAAGGTGAACCAGGTTTAGATGGTTTCCCAGGTCTTCAAGGAGAAAAGGGGGACAGAGGAGACAAGGGGGAGAAGGGTGAAAGAGGATCAAtaggaaaaaaaggtttaaaagggCAGAAAGGAGAGCAAGGACCTCCAGGGCTTGATCAGCCTTGTCCTGTGGGGCGTGATGGGCTGCCCATACCAGGATGCTGGCATAagTTTTCTCCTATTGCTCTCTTGCAGTAATGACTAACCTGGAGCATGGAGTTTGTacatattgatatatattttgcaagtaacatttgctttttctcccaatttttttagtcatttcttatttaataaattggGTTTTCATATGGGAGCCCCTGCAAAATAATGTCTGTATCGCTGCATTAACAAAGAGAGGCTCTCGACTGCCACAATAACAAGTGTAGAAAAGCAATGAAGCGAGCCTCATAGGTGCTGAGACTGTACTGATATTGAGAAGAGACATGAACTCAATGCTTGTGGATGCACAGAGAATGCTGCTGCTGTCCTTAAGGAGAGAACATAACCCTGAACTTTCTAACAGACTGACCACTGTGTCTGCACATGATTACTTCTTCACTGGCTGTCTTGTTTTCCTGGGCGCCATTTGAAACAACCAACCCCATCCGTTCTTCGCTAAATGTTTGCTTTGAAAGGAAGAGGCTTCAGGGCAGGGTGGCAAAGCCAAGCGCCCATCTCAGCCCTAAAGGACACTGAATGGGCTACATGGAGGGATTATGCTTTGCCAGTTCAACTGGATGTTTCCATTGAAAAGGCTGACCTGTACTACAGGGTACGCAATGTGGACGTTGCACTGGATTTGTACTGGTGTGCATATGGACAAATCTGCACTCAGGAAACTCTTTTCACTTGGTCAGTAGGAAAAGGCTTACTGTCTTTTGCTCCATTTCTCACTAAAATATACCAGTGGAGTGGTGGAAAAAGTAACTGATATTATGTAAAGTTTTCATAAGTCTTGTCTGTTTATAAGATCTTTCATAAACTAAAACAACTTTGGACTTTTAGcctattcattgtttttgtagGGTTGTCTGCATCCTCAATGAGCATTGTATgaagtgtgtgtaaataaaattgatcattttta

Function

NR:

description
PREDICTED: collagen alpha-1(XXIII) chain-like

GO: NA

KEGG:

id description
K24355 COL23A; collagen type XXIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220676.1 True 2852 mRNA 0.49 31 11547987 11626108

Neighbor

gene id symbol gene type direction distance location
trnav-cac_11 NA coding downstream 464 11547451 ~ 11547523 (-)
trnav-aac_28 NA coding downstream 956 11546959 ~ 11547031 (-)
mat2b LOC107590055,LOC107756808,LOC107673835,LOC107749920,LOC107570697,LOC107667431 coding downstream 1743 11540592 ~ 11546244 (-)
zgc:165573 NA coding downstream 7982 11536878 ~ 11540005 (-)
ca4c LOC107590125,LOC107756797,LOC107673808,LOC107749941,LOC107667426,LOC107570806 coding downstream 401293 11139986 ~ 11146694 (-)
LOC122326908 clk4b,LOC107756806,LOC107673840,LOC107749918,LOC107570696,LOC107667599 coding upstream 1432 11627540 ~ 11633199 (-)
mapk9 mapk9,LOC107756804,LOC107566214,LOC107673832,LOC107667593,LOC107590058 coding upstream 205052 11831160 ~ 11847343 (-)
gfpt2 gfpt2,LOC107756803,LOC107590059,LOC107749915,LOC107667598,LOC107566211 coding upstream 225402 11851510 ~ 11866992 (-)
kiaa1191 kiaa1191,zgc:123105,LOC107689181,LOC107756802,LOC107749914 coding upstream 247320 11873428 ~ 11881253 (-)
si:dkeyp-72g9.4 si:dkeyp-72g9.4,LOC107689183,LOC107756801,LOC107749913,LOC107566215,LOC107590060,LOC107667601 coding upstream 257259 11883367 ~ 11888859 (-)
G145708 LOC107667428,LOC107756812,LOC107590098,LOC107673825 non-coding downstream 12441 11532458 ~ 11535546 (-)
G145666 NA non-coding downstream 411456 11135914 ~ 11136531 (-)
G145657 NA non-coding downstream 440621 11105913 ~ 11107366 (-)
G145559 NA non-coding downstream 620500 10923433 ~ 10927487 (-)
G145549 NA non-coding downstream 656835 10885344 ~ 10891152 (-)
G145781 adra2db,LOC107566213,LOC107667592,LOC107756796,LOC107590063,LOC107689214,LOC107749943 non-coding upstream 368440 11994548 ~ 11998276 (-)
G145821 NA non-coding upstream 509239 12135347 ~ 12149436 (-)
G145831 NA non-coding upstream 525695 12151803 ~ 12154754 (-)
G145829 LOC107590069,LOC107689193 non-coding upstream 529222 12155330 ~ 12157944 (-)
G145835 NA non-coding upstream 551195 12177303 ~ 12179045 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other downstream 599619 10911230 ~ 10948368 (-)
LOC122326213 NA other downstream 690559 10854666 ~ 10857428 (-)
prob1 LOC107673843,LOC107590111,LOC107733495,LOC107715308,LOC107557040 other downstream 830827 10711570 ~ 10717160 (-)
LOC122326060 gria3,LOC107548214,LOC107559424,LOC107700029,LOC107715357,LOC107669376,LOC107568987,LOC106603380 other downstream 1415152 10107731 ~ 10132835 (-)
aipl1 aipl1,LOC107664920,LOC107585578,LOC107743670 other downstream 1537060 9882417 ~ 10010927 (-)
LOC122326065 clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918 other upstream 180716 11806824 ~ 11812583 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other upstream 346108 11972216 ~ 11985072 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other upstream 386103 12012211 ~ 12057607 (-)
LOC122326615 LOC101885612 other upstream 532564 12158672 ~ 12161667 (-)
G145910 NA other upstream 748738 12374846 ~ 12375545 (-)

Expression


Co-expression Network