RNA id: TU215321


Basic Information

Item Value
RNA id TU215321
length 1367
RNA type TUCP
GC content 0.51
exon number 12
gene id LOC122326065
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11806824 ~ 11812583 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAGCCGTGAGTGTAAAGCGGAAGTCATAAAGGGTGGTGGAGCTCAAGTCTGGAAAGCACAGTGTCTTATTTTACGACTTTAAGTAACGGGTGAAAGCGGTCAGATGCGGCGTTCTAAGCGGATGCGGTCGCCGGATGGCTGGATCGCGGAGTACAGTTGGGAGGAGAGAGTGGAGGTGCACAAGAGACCGAAGCGCAGCTCTCGCAGCGGGGAAAGAGAGCGGCAGCCCGGCAGAACCCATCACTATAAGACATACGaaagGTGTCACATTAGCTCAAAGAGGCTGGAGTGCAGAGAGCGCAGGGCCAGAGAGGCCAGTCTTGAGCATGGAGGTTTTAAGGGTCGCGTGGACCCGGTCCGGGAAACGGCGAGGGAGAAAGATGAGAACCATTACAGCCAGTCGTCCCGCGCATAGAGGACGAAGTCGACGGAGCAGCAGAGAGCGCCAGCGATCACGTCATCCCAGTCCCGCTCAGACTCGAGAAGTCATCGCAGGAAAAGAACCAAGAGTAttgaggatgatgaggagggTCACCTGGTCTATCACAATGGAGACATGCTAAGAGCAAGATATGAGATTATAGGGACTCTGGGCGAAGGAGCCTTTGGAAAAGTAGTAGAGTGCCTTGACCGTTCAAAAAGCAATGCAAGAGTTGCGCTGAAGATCATCAAAAATATCGAGCGCTATCGTGAGGCAGCCTTGTCAGAGGTTGATGTGCTTGAGCGGATAAACTCGCTTGATGAGGAAAAGAGATTTGCTTGTGTCCGGATGCTGGACTGGTTCGATCACCACGGCCACATCTGCATAGTGTTTGAGCTGCTGGGACTGAGCACGTATGACTTCCTGAAGGAGAATGGATTCATGCCCTTCTCGTTGAACCAGATCAGATTCATGGCAGACCAGATATTCAGAGCCGTGCAGTTTCTGCATCGAAATAAGTTGACTCACACTGACCTCAAGCCTGAAAACATTCTGTTTGTGGACTCCAACTATGACATCAAGTACAACTCCAAAATGAAGCGAGACGAGAGGACCTTAAAGAGGCTGGATGTGAAAGTTGTTGACTTTGGCAATGCTACCCATGACCACGAGCACCACACCTCTGTGGTGTCCACACGTCACTACAGGGCTCCAGAAGTTATATTAGAACTTGGCTGGAACCAGGCGTGTGACGTGTGGAGTTTGGGCTGTATCCTGATTGAGTTCTATCTGGGGTTAACCTTATTTCAGACTCACGACAGTAAAGAGCATCTGGCGATGATGGAGAGGGTTTTAGGACCCATACCAGCATACCTGCTTCAGAAAACCAGGAAGCGGCGTTATGTGCATCATGACAAATTGGACTGGGATGAGCACAGCTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215255 lncRNA downstream 271814 11532458 ~ 11535546 (-) True G145708
TU215203 lncRNA downstream 670829 11135914 ~ 11136531 (-) True G145666
TU215192 lncRNA downstream 699994 11105913 ~ 11107366 (-) True G145657
TU215026 lncRNA downstream 859082 10946952 ~ 10948278 (-) False si:dkey-22f5.9
TU215030 lncRNA downstream 879873 10923433 ~ 10927487 (-) True G145559
TU215359 lncRNA upstream 159633 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 181965 11994548 ~ 11998276 (-) True G145781
TU215377 lncRNA upstream 199628 12012211 ~ 12046035 (-) False rgs14b
TU215376 lncRNA upstream 227227 12039810 ~ 12046035 (-) False rgs14b
TU215379 lncRNA upstream 227227 12039810 ~ 12046035 (-) False rgs14b
XM_043222121.1 mRNA downstream 174161 11627540 ~ 11633199 (-) True LOC122326908
XM_043220676.1 mRNA downstream 181252 11547987 ~ 11626108 (-) True LOC122326002
XM_043222025.1 mRNA downstream 261116 11540592 ~ 11546244 (-) False mat2b
XM_043222024.1 mRNA downstream 261116 11540592 ~ 11546244 (-) False mat2b
XM_043222023.1 mRNA downstream 261320 11540592 ~ 11546040 (-) True mat2b
XM_043221056.1 mRNA upstream 18577 11831160 ~ 11847343 (-) False mapk9
XM_043221054.1 mRNA upstream 18577 11831160 ~ 11847342 (-) True mapk9
XM_043221055.1 mRNA upstream 18577 11831160 ~ 11847341 (-) False mapk9
XM_043221832.1 mRNA upstream 38927 11851510 ~ 11866992 (-) True gfpt2
XM_043221823.1 mRNA upstream 60845 11873428 ~ 11881253 (-) False kiaa1191
unassigned_transcript_2531 other downstream 259837 11547451 ~ 11547523 (-) True trnav-cac_11
unassigned_transcript_2530 other downstream 260329 11546959 ~ 11547031 (-) True trnav-aac_28
unassigned_transcript_2528 other downstream 685686 11121603 ~ 11121674 (-) True trnae-cuc_39
unassigned_transcript_2527 other downstream 695879 11111410 ~ 11111481 (-) True trnad-guc_16
unassigned_transcript_2526 other downstream 696256 11111033 ~ 11111104 (-) True trnad-guc_15
TU215439 other upstream 346089 12158672 ~ 12161580 (-) False LOC122326615
unassigned_transcript_2532 other upstream 372947 12185530 ~ 12185601 (-) True trnac-gca_120
XR_006247554.1 other upstream 499547 12312130 ~ 12312203 (-) True LOC122327021
XR_006247555.1 other upstream 499770 12312353 ~ 12312426 (-) True LOC122327022
XR_006247556.1 other upstream 499992 12312575 ~ 12312648 (-) True LOC122327023

Expression Profile