RNA id: unassigned_transcript_2527



Basic Information


Item Value
RNA id unassigned_transcript_2527
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnad-guc_16
representative True

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11111410 ~ 11111481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215192 lncRNA downstream 4044 11105913 ~ 11107366 (-) True G145657
TU215027 lncRNA downstream 163132 10911230 ~ 10948278 (-) False si:dkey-22f5.9
TU215026 lncRNA downstream 163132 10946952 ~ 10948278 (-) False si:dkey-22f5.9
TU215030 lncRNA downstream 183923 10923433 ~ 10927487 (-) True G145559
TU215019 lncRNA downstream 220258 10887145 ~ 10891152 (-) False G145549
TU215203 lncRNA upstream 24433 11135914 ~ 11136531 (-) True G145666
TU215255 lncRNA upstream 420977 11532458 ~ 11535546 (-) True G145708
TU215359 lncRNA upstream 860735 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 883067 11994548 ~ 11998276 (-) True G145781
TU215377 lncRNA upstream 900730 12012211 ~ 12046035 (-) False rgs14b
XM_043221301.1 mRNA downstream 20095 11055467 ~ 11091315 (-) False rap1gap2b
XM_043221299.1 mRNA downstream 20095 11055467 ~ 11091315 (-) True rap1gap2b
XM_043221300.1 mRNA downstream 20733 11055467 ~ 11090677 (-) False rap1gap2b
XM_043221303.1 mRNA downstream 29168 11055467 ~ 11082242 (-) False rap1gap2b
XM_043221302.1 mRNA downstream 29169 11055467 ~ 11082241 (-) False rap1gap2b
XM_043221553.1 mRNA upstream 1889 11113370 ~ 11121350 (-) True zgc:152891
XM_043221554.1 mRNA upstream 10822 11122303 ~ 11127756 (-) True tpst1l
XM_043221556.1 mRNA upstream 16900 11128381 ~ 11131166 (-) True LOC122326577
XM_043221555.1 mRNA upstream 16900 11128381 ~ 11131014 (-) False LOC122326577
XM_043220802.1 mRNA upstream 28505 11139986 ~ 11146694 (-) False ca4c
unassigned_transcript_2526 other downstream 306 11111033 ~ 11111104 (-) True trnad-guc_15
unassigned_transcript_2524 other downstream 14858 11096480 ~ 11096552 (-) True trnav-uac_7
unassigned_transcript_2522 other downstream 19182 11092147 ~ 11092228 (-) True trnas-uga_120
TU215015 other downstream 253982 10854666 ~ 10857428 (-) True LOC122326213
XR_006247520.1 other downstream 394250 10711570 ~ 10717160 (-) False prob1
unassigned_transcript_2528 other upstream 10122 11121603 ~ 11121674 (-) True trnae-cuc_39
unassigned_transcript_2530 other upstream 435478 11546959 ~ 11547031 (-) True trnav-aac_28
unassigned_transcript_2531 other upstream 435970 11547451 ~ 11547523 (-) True trnav-cac_11
TU215321 other upstream 695879 11807360 ~ 11812583 (-) True LOC122326065
TU215322 other upstream 695879 11807360 ~ 11812583 (-) False LOC122326065