RNA id: unassigned_transcript_2530


Basic Information

Item Value
RNA id unassigned_transcript_2530
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnav-aac_28
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11546959 ~ 11547031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTttccgtagtgtagtggttatcacgttcgcctaacacgcgaaaggtccccggTTCGAAACCGGGCGGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215255 lncRNA downstream 11413 11532458 ~ 11535546 (-) True G145708
TU215203 lncRNA downstream 410428 11135914 ~ 11136531 (-) True G145666
TU215192 lncRNA downstream 439593 11105913 ~ 11107366 (-) True G145657
TU215027 lncRNA downstream 598681 10911230 ~ 10948278 (-) False si:dkey-22f5.9
TU215026 lncRNA downstream 598681 10946952 ~ 10948278 (-) False si:dkey-22f5.9
TU215359 lncRNA upstream 425185 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 447517 11994548 ~ 11998276 (-) True G145781
TU215377 lncRNA upstream 465180 12012211 ~ 12046035 (-) False rgs14b
TU215376 lncRNA upstream 492779 12039810 ~ 12046035 (-) False rgs14b
TU215379 lncRNA upstream 492779 12039810 ~ 12046035 (-) False rgs14b
XM_043222025.1 mRNA downstream 715 11540592 ~ 11546244 (-) False mat2b
XM_043222024.1 mRNA downstream 715 11540592 ~ 11546244 (-) False mat2b
XM_043222023.1 mRNA downstream 919 11540592 ~ 11546040 (-) True mat2b
XM_043222022.1 mRNA downstream 927 11540592 ~ 11546032 (-) False mat2b
XM_043222108.1 mRNA downstream 6954 11536878 ~ 11540005 (-) True zgc:165573
XM_043220676.1 mRNA upstream 956 11547987 ~ 11626108 (-) True LOC122326002
XM_043222121.1 mRNA upstream 80509 11627540 ~ 11633199 (-) True LOC122326908
XM_043220744.1 mRNA upstream 259793 11806824 ~ 11810022 (-) False LOC122326065
XM_043221056.1 mRNA upstream 284129 11831160 ~ 11847343 (-) False mapk9
XM_043221054.1 mRNA upstream 284129 11831160 ~ 11847342 (-) True mapk9
unassigned_transcript_2528 other downstream 425285 11121603 ~ 11121674 (-) True trnae-cuc_39
unassigned_transcript_2527 other downstream 435478 11111410 ~ 11111481 (-) True trnad-guc_16
unassigned_transcript_2526 other downstream 435855 11111033 ~ 11111104 (-) True trnad-guc_15
unassigned_transcript_2524 other downstream 450407 11096480 ~ 11096552 (-) True trnav-uac_7
unassigned_transcript_2522 other downstream 454731 11092147 ~ 11092228 (-) True trnas-uga_120
unassigned_transcript_2531 other upstream 420 11547451 ~ 11547523 (-) True trnav-cac_11
TU215321 other upstream 260329 11807360 ~ 11812583 (-) True LOC122326065
TU215322 other upstream 260329 11807360 ~ 11812583 (-) False LOC122326065
TU215325 other upstream 262633 11809664 ~ 11812583 (-) False LOC122326065
TU215439 other upstream 611641 12158672 ~ 12161580 (-) False LOC122326615

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU805836 True 203 lncRNA 0.35 1 CI01180000 8729274 ~ 8729476 (-)
rainbow trout (Oncorhynchus mykiss) TU805836 False 729 lncRNA 0.43 2 NC_048572.1 42260267 ~ 42263298 (+)
rainbow trout (Oncorhynchus mykiss) trnav-aac-345 True 73 mRNA 0.55 1 NW_023494034.1 17169 ~ 17241 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_539 True 73 tRNA 0.55 1 NC_053122.1 8872612 ~ 8872684 (+)
striped catfish (Pangasianodon hypophthalmus) trnav-aac_20 True 73 tRNA 0.55 1 NC_047609.1 4264453 ~ 4264525 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_539 True 82 tRNA 0.59 1 NC_056702.1 26078194 ~ 26078275 (+)
mexican tetra (Astyanax mexicanus) trnav-aac_20 True 73 tRNA 0.49 1 NC_035919.1 8940311 ~ 8940383 (+)