RNA id: XM_043222022.1


Basic Information

Item Value
RNA id XM_043222022.1
length 2058
RNA type mRNA
GC content 0.45
exon number 7
gene id mat2b
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11540592 ~ 11546244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTGGCATATGGTTTGTTCAaacaatgtttatattatacaaaTCTGCGTTTCAATGCGAAAACGAAATATAGACGATTTCAAGCTGTTTGAAAACGTTTCGTGCTATTAGCTTTGTGTCGGCTGctttggctttattttaaggGACTCCTTCGCATTCTGCCGTTAAtctattttaaagttttgttcCTACGGAGTGTCTCGGCATTTTGTAATTTCCTATTACATAATTACTTGCGAGTATGCCGACGTTTGATATTGATGGTAGTCTTTGATGCTGGGGCATAAAACGGCTGACGTGAACTAAAGCGAAACTCAGCCGCATAGGAACTGCGCAGAAGTACGCAGCTATGATGCGCTAGAACACTTCTCTTTGTTTTGGTCTAAAGCCGCTGTTTACACTGCGAGGATGGCGTAGAGATTCACTAATCTCCAGAACATAAACAGGCGTTAGCGTTACGTGCGTATGTTCTATGAATCATATCGCACACGGGCCTAATTTGACAGCACGAGCCACCCGTTCCAAGAGGGTTTAAGGATTGAGTGGCGCATCAGAAATAGAGGTTTCTCCTCCAGGATATGATAACAGTAGTCACACTGAAATGAGTATCAGAGATAAAGAGCTTAAGATACATTTCAAACCCGGGCACGTTGAGCTTGTTCAGGATGAAGTCTACACTCCTTACCGGCGCGTGCTTGTGACTGGTGCCACGGGGCTCCTGGGCCGTGCTGTTTACAAAGAGTTCAAGAACAATGATTGGGATGCTTTGGGGTGCGGCTACAACCGCGCACGGCCTTGTTTTCTGAAGTGTAATCTCCTGGATGAAGACGCAGTGCGAGGGGTCATTCAAGGGTTTCAGCCTCATGTCATTGTGCACTGTGCTGCTGAGAGGAGGCCAGATGTTGTGGAGCGTCATACTGAAGCAGCCATGAACCTGAATGTGCATGCATGTTCTACTCTGGCCAAAGAAGCAGTGGGCATCTTCCTCATTTACATCAGCACAGATTACGTTTTTGATGGGCGCAATCCACCCTATGGAGAAAACGATGCCCCCAATCCTTTGAATTTGTATGGGAAGTCCAAGCTAGAGGGTGAAAGGGAGATTCTCAGACACTGCCCAGCAGGTGCAGCTGTACTACGAGTGCCCATTCTGTTTGGAGAGGTGGAGAAGGTTGAAGAGAGTGCAGTGACCGTGTTGTGGGACCGTGTTCAGGAGGGAGCCGAGAGCTGCACCATAGACCACTGTCAGCAACGCTTTCCCACTTACACTAATGACGTGGCACGTGTCTGCCGGAACATGGCCGAGAGAGCCCTTCAGGACCCGTCACTGCGTGGAATCTTCCATTATTCTGCCAAAGAGCAGATGACCAAATATGAGATGGCCTGTGCAATAGCAGATGCTTTCAACCTGCCCAGCAGTCATCTAATACCAATGACAGATCAGCCTACAGGAGCAGGTGCCCAAAGGCCTCAAAATGCACAGTTAGAGTGCTCACGTCTGGAGCTCCTTGGTCTGAGTGCAGAACCCACTCCTTTCAAGACTGCCATCCGGGACAGCCTCTGGCCCTTCCAGCATGACAAACGATGGAGGCAGACTGTCTTTCATTAAGGCGACAACTATACCCCAAACTCCAGAAGAAAACAGGACCGCACTCTTTAAATGTTTAGCGTTTCAATATTTCGCTGAAGTACCAATCCTGTTTCACCGTCTTGAATTAAAACAGTTCCGCGCTTTTTACAAGTTCTGCAGCTTTGTTTGATGTTCAAGTACACATTTATTATAGCCAGCCGGTGTTTCacctttaagtgtttttgtgcGAAATGCACTGTGGGTTACAGAGTCAAGCCTTGactgtattttgtgtttatttcctAACTGTATTACTTTATGTAAATGACAAATTGAAGACATAAATGTTTGATAAAAAGAACAGAAGATATCCTAAGTTTCTGATGTTCCctcttttttcctttaaaaaaaaatctggtatTTACTTGAGgacaaaacaatgcaatatgAATAAAGCACCAGAAAggttaataaaatcaaaccttta

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0045226 extracellular polysaccharide biosynthetic process biological_process
GO:0006556 S-adenosylmethionine biosynthetic process biological_process
GO:0008831 dTDP-4-dehydrorhamnose reductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215255 lncRNA downstream 5046 11532458 ~ 11535546 (-) True G145708
TU215203 lncRNA downstream 404061 11135914 ~ 11136531 (-) True G145666
TU215192 lncRNA downstream 433226 11105913 ~ 11107366 (-) True G145657
TU215026 lncRNA downstream 592314 10946952 ~ 10948278 (-) False si:dkey-22f5.9
TU215030 lncRNA downstream 613105 10923433 ~ 10927487 (-) True G145559
TU215359 lncRNA upstream 426184 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 448516 11994548 ~ 11998276 (-) True G145781
TU215377 lncRNA upstream 466179 12012211 ~ 12046035 (-) False rgs14b
TU215376 lncRNA upstream 493778 12039810 ~ 12046035 (-) False rgs14b
TU215379 lncRNA upstream 493778 12039810 ~ 12046035 (-) False rgs14b
XM_043222108.1 mRNA downstream 587 11536878 ~ 11540005 (-) True zgc:165573
XM_043222109.1 mRNA downstream 1084 11536878 ~ 11539508 (-) False zgc:165573
XM_043220802.1 mRNA downstream 393898 11139986 ~ 11146694 (-) False ca4c
XM_043220801.1 mRNA downstream 393898 11139986 ~ 11146694 (-) True ca4c
XM_043221556.1 mRNA downstream 409426 11128381 ~ 11131166 (-) True LOC122326577
XM_043220676.1 mRNA upstream 1955 11547987 ~ 11626108 (-) True LOC122326002
XM_043222121.1 mRNA upstream 81508 11627540 ~ 11633199 (-) True LOC122326908
XM_043220744.1 mRNA upstream 260792 11806824 ~ 11810022 (-) False LOC122326065
XM_043221056.1 mRNA upstream 285128 11831160 ~ 11847343 (-) False mapk9
XM_043221054.1 mRNA upstream 285128 11831160 ~ 11847342 (-) True mapk9
unassigned_transcript_2528 other downstream 418918 11121603 ~ 11121674 (-) True trnae-cuc_39
unassigned_transcript_2527 other downstream 429111 11111410 ~ 11111481 (-) True trnad-guc_16
unassigned_transcript_2526 other downstream 429488 11111033 ~ 11111104 (-) True trnad-guc_15
unassigned_transcript_2524 other downstream 444040 11096480 ~ 11096552 (-) True trnav-uac_7
unassigned_transcript_2522 other downstream 448364 11092147 ~ 11092228 (-) True trnas-uga_120
unassigned_transcript_2530 other upstream 927 11546959 ~ 11547031 (-) True trnav-aac_28
unassigned_transcript_2531 other upstream 1419 11547451 ~ 11547523 (-) True trnav-cac_11
TU215321 other upstream 261328 11807360 ~ 11812583 (-) True LOC122326065
TU215322 other upstream 261328 11807360 ~ 11812583 (-) False LOC122326065
TU215325 other upstream 263632 11809664 ~ 11812583 (-) False LOC122326065

Expression Profile