RNA id: XM_043220801.1


Basic Information

Item Value
RNA id XM_043220801.1
length 1711
RNA type mRNA
GC content 0.42
exon number 8
gene id ca4c
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11139986 ~ 11146694 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATCTCTAGTCCTGTAGAATAGTGCCCTCTGCAGGCTATTTGATAAAGCAAACTCATTAAGCCGTAGTTCAGGGAAAACTTCACTAGGTTCAACTGCCTGTAGGTTGTTTAGTGGGAGTTAAATGTCCTCATCAAGGGCCTCGAATGCCCTACTTTGCTGCCCTACACCTGTCATTTAAACTCTTACCTGTAAAACGCTCTTTCCCTTCTCCCCTCCTTCCTTTCCTCTATTATATAAAATGGGTTCCTGTCACACAAGGCATTgagatttgtatttgtattgtagACATGACATCCATTCTGTCGGTCTCATCTGTTCTGTTGGTTCTAAAGCTCTGCTCAGGCGAGTGGTGCTACCAGAGCCAGTTTTCCTGTCAGGACGCATGTAGAGTTCCTTCGGAGTGGAAGAATGCGTTTCCTAATTGCGGAGGTCAGAGACAATCGCCTATCAATATCGTCACACGCAAAGTGAAGCATGATCCAAAACTGACCAATATTATCTTTGATGGTCATGACAAGGTTTTTAATATGAGTGTGGAAAACCATGGACATTCAGCTTACTTCACTCTCCCTCAGTCTGTGCGTCTCCTTGGAGGGGGTCTGCCAGCCGCATACAAGGCCATTCAGTTTCACCTGCACTGGGGAGAGAACAGCGGCCAGGGGTCCGAGCACTCTGTGGACGGGGAGCGTTATCCCATGGAGCTCCATATTGTTCACATTAAAGAGAAGTATGGCAGCTTGGGAGAGGCTCTAAATGACTCTACAGGGGTGGCAGCACTTGCCTTCTTTTTTGAGGTGACCACTGGCCAAAACAAACAGCTTGACAGAGTCATAAAGGCTTTAGGAAAAGTCCGACATGAAGGAAACAGCAGTGAAGTTGAAGACTTTAAATTGGGCGACATCATCCCACCAGCCAATAAACTGAACTACTATCGGTACTTGGGTTCCTTGACCACACCAGGATGTGACCAGGCCGTCGTGTGGACGGTTTTCCAAAAGACTCTGCCCATAAGCAAAAATCAGCTGATGTCAATGGATAAACAGCTGTTATTCGGAACAGAAAAACCAATGACTGGAGTTTTCCGTCCCGTGCAGAATCTGAATGGACGGGTTGTGTACACGTCTGTGCCAGCTCACAGTCTGTGCGTCCTGCCCAGTCTGATCACCCTGTTTCTGTgcctcttttgtgtttttggacAACAAAGGTGTTTTCACTGAATGGTAGAGACCGCATCTCTTTTAACAAAGGATGTTCCATATTAAACTTCCAGAAGCAAAGTATACGTAATCAGCTGAGCACTGAAGTGAAGGCACTGGGACAGATCTCTGGCACTGACCGTGGAAAAGAGATATCTATTTTCTGTGTTCACACAGCTATTCATATTCTCATTGTTACCTCTTATGTCTTCCGATGTGCTCTTTTAGTTGTGGCAGCTTTGGCAATTTTTTGGGTTTCTCATATGTTTTCCATTACTTTTTTGGTTagcatttaaagtattttaaaatatattctatctATAGTGCCGTCAAAAGATTAATCTCGATGAATCACACTCGTCCAAAAGTTTTTGTCTACAAATTATGTGTATgtacggtgtatatttattatacaagtttattaaagcatatattttgaaaatatgtccatgcatttatgtgtttatatatttatattcatataaatcatatcatatattgaaatatttaata

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K18246 CA4; carbonic anhydrase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215203 lncRNA downstream 3455 11135914 ~ 11136531 (-) True G145666
TU215192 lncRNA downstream 32620 11105913 ~ 11107366 (-) True G145657
TU215027 lncRNA downstream 191708 10911230 ~ 10948278 (-) False si:dkey-22f5.9
TU215255 lncRNA upstream 385764 11532458 ~ 11535546 (-) True G145708
TU215359 lncRNA upstream 825522 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 847854 11994548 ~ 11998276 (-) True G145781
TU215377 lncRNA upstream 865517 12012211 ~ 12046035 (-) False rgs14b
TU215376 lncRNA upstream 893116 12039810 ~ 12046035 (-) False rgs14b
XM_043221556.1 mRNA downstream 8820 11128381 ~ 11131166 (-) True LOC122326577
XM_043221555.1 mRNA downstream 8972 11128381 ~ 11131014 (-) False LOC122326577
XM_043221554.1 mRNA downstream 12230 11122303 ~ 11127756 (-) True tpst1l
XM_043221553.1 mRNA downstream 18636 11113370 ~ 11121350 (-) True zgc:152891
XM_043221297.1 mRNA downstream 68862 11055467 ~ 11071124 (-) False rap1gap2b
XM_043222108.1 mRNA upstream 390184 11536878 ~ 11540005 (-) True zgc:165573
XM_043222109.1 mRNA upstream 390184 11536878 ~ 11539508 (-) False zgc:165573
XM_043222025.1 mRNA upstream 393898 11540592 ~ 11546244 (-) False mat2b
XM_043222024.1 mRNA upstream 393898 11540592 ~ 11546244 (-) False mat2b
XM_043222023.1 mRNA upstream 393898 11540592 ~ 11546040 (-) True mat2b
unassigned_transcript_2528 other downstream 18312 11121603 ~ 11121674 (-) True trnae-cuc_39
unassigned_transcript_2527 other downstream 28505 11111410 ~ 11111481 (-) True trnad-guc_16
unassigned_transcript_2526 other downstream 28882 11111033 ~ 11111104 (-) True trnad-guc_15
unassigned_transcript_2524 other downstream 43434 11096480 ~ 11096552 (-) True trnav-uac_7
unassigned_transcript_2522 other downstream 47758 11092147 ~ 11092228 (-) True trnas-uga_120
unassigned_transcript_2530 other upstream 400265 11546959 ~ 11547031 (-) True trnav-aac_28
unassigned_transcript_2531 other upstream 400757 11547451 ~ 11547523 (-) True trnav-cac_11
TU215321 other upstream 660666 11807360 ~ 11812583 (-) True LOC122326065
TU215322 other upstream 660666 11807360 ~ 11812583 (-) False LOC122326065
TU215325 other upstream 662970 11809664 ~ 11812583 (-) False LOC122326065

Expression Profile