RNA id: XM_043221297.1


Basic Information

Item Value
RNA id XM_043221297.1
length 3176
RNA type mRNA
GC content 0.48
exon number 24
gene id rap1gap2b
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11055467 ~ 11091315 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacagtctgtgcAGGCAAGGACGGCACCTCATCTTTGGAGATTGTGACGATGCAGATTTAGCCAGAGCTGGTGTCGGTGTGATGTGACAAGGGACTGAGGACTAGGACTGAGACCATGTCTGAGTTCAGGTCTAGAGTGCGCTGTCGGAGAGCAGGTGTCCGTGCTGCCGCCGCTCTTATCGGACTCCTCCACCGGTCACGCAAGCGGTGTGAGAGACGGAGGTTGGCGGAGACAGACGGCCAGTGGAAGCAGGAGTTGCTGACCATCTCCAATGTACCCCTGGCAGACTGCCCCCTCTCCCCCAGAACCGCCCCTCCCGCCATGAAGTCTACTCAGTTCTTTGACATGCTGGACAAGATGGAGGTTTCTGAGGTGGAGGAAATAAGGCCACAGGGATTAAAGGATGATTACATTCCGTACCCACGGATACAGGAGGTGTTGCAGCGGGGTGAGCCATACCCTCAGGTTATCCTTCCTCAGTTTGGGGGTTACTGGATAGAAGATCCGGACCCCTCTGCTGCCACCCCGAACTGGGAGAATGGCATCTGTGATGAGGAAGATGGAGAAGGAAGCAATTCAGGACAGTTTGGCTACAGACTGGAGAGCAACTATGCCATTCGCGCGTACCGCAAGCACTTTCTGGGAAGGGAACATCTGAACTTCTACTGCATGGCCAGTAACCATGGCAACCTTGTACTGTCCCTCAGACACGAGGAGGTGAAGGAGCAAGAGTACCTGCACATCATTCTCAGGACTCCATCAAAGACAATCTATGACAGGATCTCTTTGGCAGGCTTGACTGAGCTCCCCAGTGTCCCTCAGTTAGCAAAGCTACTATGTGAAGACATTGTGGGTCTGAGGTTTAGTCCTGTGCTGTATCCAAAGggcTCTCAATTAATAGTGAATTACGATGAGCATGAGTTAAACAACACGTTCAAATTTGGTGTCATCTACCAAAAGTTTGGGCAGACCTCAGAGGAGGAGTTGTTTGGGAACAATGAAGAAACTCCGGCGTTTGCAGAGTTCCTCCGTGTGTTGGGAGACTGTGTAGAGCTGCAGGATTTTAAAggGTTTCGAGGTGGCTTGGACGTGTCTCACGGTCAAACAGGATCTCAGTCGGTCTACACTGTGTTCAGAGGACAGGAACTCATGTTCCACATCTCCACCAAACTGCCCTACACCGAGGGAGACACGCAGCAGGTTCAAAGGAAGCGTCACATTGGGAATGACATTGTGGCTGCGGTTTTTCAAGAGGATCCCACGCCTTTTGTGCCTGACATGATCGCTTCCAATTTCCTCCATGCCTTTATTGTGGTTCAAGTGGAAAACCCAGGAACAGATGACACCACATACAAGGTGTCTGTCACAGCACGTGAAGATGTGCCACAGTTCGGCCCTCCGCTTCCCAGTCCACCCATCTTTAAAAAGGGTCCAGAATTCAGAGAGTTTCTGCTGACCAAGCTGATCAATGCGGAGCTGGCGTGCTACAGGTCGAGCCGATTTGCCAAGCTTGAGGAGAGAACGCGAACAGAACTGCTGGACAACCTTCATAACGAGTTACACAAGCGCACACAGGCAATGCTGGGTCATCCCCTCAGCGCAGATGAAGAGAGGATGGAGAACGGAGGACATGGAGGAATACTGGAGTCTATTAAGCGGGCGATGCGCGTGCGCAGTCACTCTATGGAGGCGATGGTGGGCTCACAGAAACACGGCCGCTGCTCTCCGGCGGGAGGAGGCGTACCCACCAGCCTGAGCGGGGTCGGTCTGACACACAGCAACACCGAGGCTGCCAAGAATTCTTCTCCGGTGACGTCGAGTGCCAAGTCTCCTCTGAAGAGTCCGGTGAAGAGACGTTCAGGTCTGTTCCCGCGGCTGCACACCAGTATGGACGGACAGTCAGAGCGCCACACGCGCAGTGTCCTAATTGATCAAAGAAGTCTAGACAGCGGTCATCTCTCACAAGAAGTGAGATCGGAGACATCGTCCAATCCTAGCTCTCCGGAGATCATCAGCAATGAGagGCCATCTCTCAAGCTGAAGGAGGTCAGTGGAAGACCAGACATCTCTCGATCCTCCTCCAGCACCAGCAGCTTCAGCAGTGCTGCAGGAGACCCAGAGACTCTGGAGGAGAAAGAGCCCAGCAGCCTTCAGATGTCTCCCAGTCTCTCACCCGTCTTCGGCTCTCTGAGCACGGAGGGACAAGGCGCAGGAACGCCAGTGATTATGTGCCGCAGCCCGACAGATTTTAGGAATAAAACCTCGCCCAGATCCAATCTGAAGTTCCGCTTTGACAGATTGAGCCAGTCTGCTGCTGGACATTAGTGAAGGGAATGTCAAAGATGACCCAGAACCATTCACCGAAGATCAAACACTGTCAGGACGGAGAAGGGACCCATCACTCAAGCCTGTGCTCCAGTCACAGGAACAAGCACACAGTTAGCATCTCTCCTAGTTCCTGCGGGCGGTCCGCAACTGGTACCGACTTGGCGCATTTAttgattttgcacattttgaagtctttcactgtaaaaagaaataaatcaaataaataatccaaTAACTTAATTAACAAAATTCCCAGCACCTGAAACATTCCACAGTATTTTGAGacttgaaaaagcttttatgaAACTAGCCACAGAAGGATGTCATCGCACAAATTAATTTCATAACAAATCTAAAGTGCACTAGAGTGatcaaaaaacaataaaatagtcTAGCACAACATTGCTTTCCTCTGTAACTCTCACACTTGTGCAATCAGGCATAGTTTGGAGGCTTTCAAgagttatttataatacatattattagaataaaacTTGAagtactacatttttttaaatgagtacTTTCATGACTGATGCCTATGTATATTAGAAAATCACCAATCACtcttatgtgtatatatttattgtgtatattcaTGGATTGGAATGCAGGTGAATAAAACGTTATTGTCACGAACAGctgaaatgtgtgaaaatgtggCACTTTTAGAAGGACTACTCCATTCTGGTCTTtggtaaaaaaagtaataatatttttggtttcCTTATAGTATAAATTGCTTAACAGAAAGAGCGTGTTAATTTATTTCTCTATGATTGTACTGCTGTGTAAAGGTTTCTGTATGGCAATGttgattttgttaaataaaatattgtattttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215027 lncRNA downstream 107189 10911230 ~ 10948278 (-) False si:dkey-22f5.9
TU215026 lncRNA downstream 107189 10946952 ~ 10948278 (-) False si:dkey-22f5.9
TU215030 lncRNA downstream 127980 10923433 ~ 10927487 (-) True G145559
TU215018 lncRNA downstream 164315 10885344 ~ 10891152 (-) True G145549
TU215192 lncRNA upstream 34789 11105913 ~ 11107366 (-) True G145657
TU215203 lncRNA upstream 64790 11135914 ~ 11136531 (-) True G145666
TU215255 lncRNA upstream 461334 11532458 ~ 11535546 (-) True G145708
TU215359 lncRNA upstream 901092 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 923424 11994548 ~ 11998276 (-) True G145781
XM_043221304.1 mRNA downstream 1251 11048199 ~ 11054216 (-) True ncbp3
XM_043221309.1 mRNA downstream 7743 11042630 ~ 11047724 (-) True pgap2
XM_043221308.1 mRNA downstream 22330 11006238 ~ 11033137 (-) False stim1b
XM_043221553.1 mRNA upstream 42246 11113370 ~ 11121350 (-) True zgc:152891
XM_043221554.1 mRNA upstream 51179 11122303 ~ 11127756 (-) True tpst1l
XM_043221556.1 mRNA upstream 57257 11128381 ~ 11131166 (-) True LOC122326577
XM_043221555.1 mRNA upstream 57257 11128381 ~ 11131014 (-) False LOC122326577
XM_043220802.1 mRNA upstream 68862 11139986 ~ 11146694 (-) False ca4c
TU215015 other downstream 198039 10854666 ~ 10857428 (-) True LOC122326213
XR_006247520.1 other downstream 338307 10711570 ~ 10717160 (-) False prob1
TU214748 other downstream 946520 10108394 ~ 10108947 (-) False LOC122326060
TU214296 other downstream 1815593 9234940 ~ 9239874 (-) False LOC122326415
TU214293 other downstream 1838877 9210651 ~ 9216590 (-) True G145046
unassigned_transcript_2522 other upstream 21023 11092147 ~ 11092228 (-) True trnas-uga_120
unassigned_transcript_2524 other upstream 25356 11096480 ~ 11096552 (-) True trnav-uac_7
unassigned_transcript_2526 other upstream 39909 11111033 ~ 11111104 (-) True trnad-guc_15
unassigned_transcript_2527 other upstream 40286 11111410 ~ 11111481 (-) True trnad-guc_16
unassigned_transcript_2528 other upstream 50479 11121603 ~ 11121674 (-) True trnae-cuc_39

Expression Profile