ncbp3 (ncbp3,LOC107737550,LOC107590045,LOC107673811,LOC107749929,LOC107667442,LOC107557088)


Basic Information

Item Value
gene id ncbp3
gene name ncbp3,LOC107737550,LOC107590045,LOC107673811,LOC107749929,LOC107667442,LOC107557088
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11048199 ~ 11054216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221304.1
TCTTGCAGACAGTCTCCTGGGCGGTGTATGTGTGTCGCGAGGCACTAGAGCAGTGTTAGCACAGCTAGCGCGAGGCTCCGTTCACTTCACTGAGAGTTAGCCGTTAGCCGCTAGCTCGTTTTAGTGAGTGATCATGGCGGCGGTGCGCAGCCTGCGGGTGTCTGTGAAGTCCGAAAGCGCGTCCGATCGGTCAGAGTCAGACTCCGAATCAGACTCGGATCGAGATGCACGGGAAGCAGAGCCCATGGAGGTGGAGGAAGGAGAGCTGGAATTGGAGTCCATCCCTGTTCGCCGAAGTTTAAAGGAGCTGTTGCCGGACACCAGCAGACGTTATGAAAATAAGGCTGGTACTTTTATCACTGGAATCGATGTCACGTCTAAGGAGGCCATCGAGAAAAAGGAGAAGCGAGCGAGAAGATTTCATTTTCGAGCAGAAGAAAATCTGGCTCAGAGAAATGTTGTTCTAGACCGGGATGTGATGAAGAAAGCGATCCCAAAGGTGCGTCTGGAAGCCCTACACATGAGTGGAGTTGATGACATGAGCACTCAGGATGTTTTTGGCTACTTTAAAGAGTATCCACCCGCCCACATTGAGTGGATAGATGACACTTCCTGCAACGTGGTGTGGCTAGACGACATCACTTCAACCAGAGCTCTCATTAACTTGAGTCGGATGCCAGACAAAAAAGAGGTCACGAGCGAAGACAGCTCGAAACCATCTGAACTTTCAGACCAGCCGCAGAAAGCTCGGCGGAACCGTGgctctgatgatgatgatgatgatgatgaagatgaggaggaaGGCGAGgttgaggatgatgatgaagaggaggcGGCGAAAGCAGATAAAAGCAGGAGCAGCGATGGCAGTGAGGGTAAAGCTAGCGACATTGAGGAAGAGACCGAAAAGAAACCACAGGAAACTGCAGAGACAAGCGTACTTTCCGAAGCAGAGCGAGAGTCTCTTTTCCGAAATGATCCGAGACCCACAGTCAAGCCCTTCAAAGGCAACAAACTGTTCTTGCGCTTTGCCACTCAGGATGACAAAAAGGAGTTGGGTGCAGCCAGGAGAAGTCGGTACTACATGAAATATGGGAATCCAAACTATGGTGGCATGAAAGGCATTTTAAGTAACTCTTGGAAACGGAGGTATCACACACGCAGAATACAGCGTGACATTCTGAAGACCAAAAAGTCTCTGATTGGGGACAGTATGGGACACACCCCACCTTACACCCATCGACACTCTGCTGACCTGGTGAATCTGCCGGAAGAGCCTatagaagaagaggaagaagaggaggaggaggaggatggagAGGAAGACATGGATGCTGATGACAGAGTGGTGGAGTACAGAGATCGGGCAGACAGGGAGCGGGGCCCACGGCTTGGGGAAGGAGGCCTGCGTAGTCGTTTAGGAGGCCTGTCGCCCGCATCGTCAGATTCGGACGAGATGGACTATGATCTGGAGCTGAAAATGATCTCAACGCCGTCTCCCAAAAAGAGTATGAAAATGACTATGTATGCCGATGAGGTAGAAACCAACCTTCGCAGTCTTCGAAACTCCATACGGACTGAAACAAGTAGCAGTGTTAAGAGTCGCattggtggtggtggtggaggtggaggaggggGAACTGGAGGTGGAGAAGGAGGAagtggaggtggaggtggaggtggaggctCATCCAAGTCTACATCAGATAAAGTGACAGATGTGAGGCAGTTACTGGAGGAGAAGAGGCAGGGTCTCTCTCAGCAGAGATCACGCCCCCCAGTGACTACAAGCAGCAAGACAGATGTGAGACAGAGATTAGGCAAAAGACCACATTCTCCAGAAAGACGCCGCTCTGTCTCTCCCGTCATCTCTAGAAAAGCAGTGTCTCGTAGAGAGCCTTTGACAGACGTGCGCAGCCGACTCGGAGTGGCAAAACACGAGAGCCGCAACCTTTACTCAGAGAcctcaaaagaaaagaaaacagGAGGCTTGTGGAGCCGCCTTGGCCCGTCTCATAGGGACAATAGAGAGGATGACAAGACTTCTTCCCGAGGGTCTTCCTCGAGAGGAGTAAGGCGACGCGATGACGAGGAATCTGACGGAGTTGACgatgatgaagaggatgatTCTCAACTGCAGAAGATGTGGGGAGCAATGATAAAGCAGAAGGAGCAGCAGTCCAACAAGATGAAGAAAAGTCGGCTGGACAACTTGCCCTCGCTGCAGATCGAGATCAGTCGGGACAGCAGCAATGGCTCGGACAGTGATTCTTGACCGACTCCTTCTGTAGGAAGTGTGGGAATCGGAGGAATGTTGAACGCTGTggaagagagatggagaaacgTCTCTAGTGGACTGGGTCCAGAGACCCTGACATGTATACTTTAACATTCCCACACTCCCACCTCTGTCTACACACTTGCAGATGTTTTCTATAGTTCTCTCTCCAGGAACCAACTTTGAGAGCGCTATTTGGAACGACAGGGCagattggaatttttttttgtcgtttcaAAGACGGGCCAGTGAATGAGTCcctcatgttttgtttttcttcaaaagaaaatagtttGCTTGCATTTAACACACATCGAGGGcccatttttaatatacagcGCTGCACCAGGTTGACAAAAACAGTCCTGTGATTTGTTGTACTTGACTGGAAGCGATTTGATTGGATGTCTgttagcaatacattttttttaaaatca

Function

symbol description
ncbp3 Predicted to enable RNA 7-methylguanosine cap binding activity and mRNA binding activity. Predicted to act upstream of or within 7-methylguanosine mRNA capping and mRNA transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NCBP3 (nuclear cap binding subunit 3).

NR:

description
nuclear cap-binding protein subunit 3

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221304.1 True 2715 mRNA 0.50 13 11048199 11054216

Neighbor

gene id symbol gene type direction distance location
pgap2 pgap2,LOC107749930,LOC107557086,LOC107673812,LOC107737576,LOC107590049 coding downstream 475 11042630 ~ 11047724 (-)
stim1b stim1b,LOC107737558,LOC107749933,LOC107557083,LOC107590093,LOC107673814 coding downstream 15062 11006238 ~ 11033137 (-)
rrm1 rrm1,LOC107684690,LOC107673837 coding downstream 58261 10982080 ~ 10989938 (-)
tnfsf10l3 tnfsf10l3,LOC107733515,LOC107715431,LOC107684692,LOC107557081,LOC108428004,LOC103035970 coding downstream 81105 10961435 ~ 10967094 (-)
phka1b phka1b,LOC107590041,LOC107673815,LOC107733481,LOC108279225,LOC108428005,LOC106602956 coding downstream 102205 10933195 ~ 10945994 (-)
rap1gap2b LOC107673809,LOC107557090,LOC107737605,LOC107749928,LOC107667436,LOC107590044 coding upstream 1251 11055467 ~ 11091315 (-)
trnas-uga_120 NA coding upstream 37931 11092147 ~ 11092228 (-)
trnav-uac_7 NA coding upstream 42264 11096480 ~ 11096552 (-)
trnad-guc_15 NA coding upstream 56817 11111033 ~ 11111104 (-)
trnad-guc_16 NA coding upstream 57194 11111410 ~ 11111481 (-)
G145559 NA non-coding downstream 120712 10923433 ~ 10927487 (-)
G145549 NA non-coding downstream 157047 10885344 ~ 10891152 (-)
G145527 NA non-coding downstream 218673 10827775 ~ 10829526 (-)
G145540 NA non-coding downstream 223069 10824848 ~ 10825130 (-)
G145530 NA non-coding downstream 256318 10788870 ~ 10791881 (-)
G145657 NA non-coding upstream 51697 11105913 ~ 11107366 (-)
G145666 NA non-coding upstream 81698 11135914 ~ 11136531 (-)
G145708 LOC107667428,LOC107756812,LOC107590098,LOC107673825 non-coding upstream 478242 11532458 ~ 11535546 (-)
G145781 adra2db,LOC107566213,LOC107667592,LOC107756796,LOC107590063,LOC107689214,LOC107749943 non-coding upstream 940332 11994548 ~ 11998276 (-)
G145821 NA non-coding upstream 1081131 12135347 ~ 12149436 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other downstream 99831 10911230 ~ 10948368 (-)
LOC122326213 NA other downstream 190771 10854666 ~ 10857428 (-)
prob1 LOC107673843,LOC107590111,LOC107733495,LOC107715308,LOC107557040 other downstream 331039 10711570 ~ 10717160 (-)
LOC122326060 gria3,LOC107548214,LOC107559424,LOC107700029,LOC107715357,LOC107669376,LOC107568987,LOC106603380 other downstream 915364 10107731 ~ 10132835 (-)
aipl1 aipl1,LOC107664920,LOC107585578,LOC107743670 other downstream 1037272 9882417 ~ 10010927 (-)
LOC122326065 clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918 other upstream 752608 11806824 ~ 11812583 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other upstream 918000 11972216 ~ 11985072 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other upstream 957995 12012211 ~ 12057607 (-)
LOC122326615 LOC101885612 other upstream 1104456 12158672 ~ 12161667 (-)
G145910 NA other upstream 1320630 12374846 ~ 12375545 (-)

Expression


Co-expression Network