RNA id: TU215377


Basic Information

Item Value
RNA id TU215377
length 910
lncRNA type read_through
GC content 0.41
exon number 6
gene id rgs14b
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12012211 ~ 12057607 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacacacacacacacacacacacacacacacattttccccTAGTGCACCTTGTCCTCAGGAAAGTCTTCATCGggaacattatttttatggtcTCTGAATGGATATCGTGTAGTGAAGTAATCAGACTCAATCAGATGACCAGCCCCCAAGCAAAGGCACAGATAGGAGGAAagaaaaagtgagagagagaatgagaaaagaGAAGGGATGGGaagccagagagagaaagaagactGAAGGGAGGGAGGCGAATCTGCGAGGTGAGGATTTTGCCTTACATCACTGAGCATGTCTTTGTGAGGATTCGATTGCTACTGTTCTAACGTGTTTTTTAAAGGTctattttgtgttgtttcaaGCAGAACAGTGCTGCACAACTGCGTGTCTGTCCTCAATGAGTGTACACTGAAATAACAACAGGTTTCTTGAAGATAACCAATAGCGTTGACTGCATTATATCTAGAGACACAGCTGATTTCCCTCCTAAAGTCGAGACATGGAAAGGACAGAGAACAAAGTGTCCACCATCTCCCCGCAAAAACAGACAGTAAAAAATAGATCCAAGTCTACAGAGGAGGTACAGCAAGCCAAGAAGGCCTTTCATACACCACAAAAATCTCTTCCGGCTAAACCAGAAACCGAACAACTAGAGGAGACCTCAGAACTGAGTGCCTCAACAGAGGAGTTCAAATGATTGCTGGATTCAAACTTCGGGGCTTTGAGATTTAGACAGATCAACTGGAATTATGGGTAATAACAAAAGGATGATTCAGTGTCTCTGTTTTACTTTAGTTAgcatagaaaaaaacaataatcacGTGTCGCTTCTTGAATTTGTACGAGTCTGAAAATGTTGgtgaaataaatgcacaacTGGATATCAaaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215363 lncRNA downstream 13935 11994548 ~ 11998276 (-) True G145781
TU215359 lncRNA downstream 37770 11972216 ~ 11974441 (-) False cnot6a
TU215255 lncRNA downstream 476665 11532458 ~ 11535546 (-) True G145708
TU215203 lncRNA downstream 875680 11135914 ~ 11136531 (-) True G145666
TU215192 lncRNA downstream 904845 11105913 ~ 11107366 (-) True G145657
TU215425 lncRNA upstream 89312 12135347 ~ 12149436 (-) True G145821
TU215441 lncRNA upstream 105768 12151803 ~ 12154754 (-) True G145831
TU215433 lncRNA upstream 109295 12155330 ~ 12157944 (-) False G145829
TU215434 lncRNA upstream 109295 12155330 ~ 12157944 (-) True G145829
TU215435 lncRNA upstream 109295 12155330 ~ 12157944 (-) False G145829
XM_043221829.1 mRNA downstream 27139 11973113 ~ 11985072 (-) True cnot6a
XM_043221993.1 mRNA downstream 58181 11896253 ~ 11954030 (-) True adamts2a
XM_043221994.1 mRNA downstream 58224 11896253 ~ 11953987 (-) False adamts2a
XM_043221996.1 mRNA downstream 63482 11896253 ~ 11948729 (-) False adamts2a
XM_043221954.1 mRNA downstream 123369 11883367 ~ 11888842 (-) False si:dkeyp-72g9.4
XM_043222011.1 mRNA upstream 29416 12075451 ~ 12079572 (-) True rbm22
XM_043221642.1 mRNA upstream 112638 12158673 ~ 12161667 (-) True LOC122326615
XM_043221641.1 mRNA upstream 112638 12158673 ~ 12161123 (-) False LOC122326615
XM_043221848.1 mRNA upstream 141888 12187923 ~ 12192887 (-) True ccdc82
XM_043221878.1 mRNA upstream 149755 12195790 ~ 12197893 (-) True LOC122326744
TU215321 other downstream 199628 11807360 ~ 11812583 (-) True LOC122326065
TU215322 other downstream 199628 11807360 ~ 11812583 (-) False LOC122326065
TU215325 other downstream 199628 11809664 ~ 11812583 (-) False LOC122326065
unassigned_transcript_2531 other downstream 464688 11547451 ~ 11547523 (-) True trnav-cac_11
unassigned_transcript_2530 other downstream 465180 11546959 ~ 11547031 (-) True trnav-aac_28
TU215439 other upstream 112637 12158672 ~ 12161580 (-) False LOC122326615
unassigned_transcript_2532 other upstream 139495 12185530 ~ 12185601 (-) True trnac-gca_120
XR_006247554.1 other upstream 266095 12312130 ~ 12312203 (-) True LOC122327021
XR_006247555.1 other upstream 266318 12312353 ~ 12312426 (-) True LOC122327022
XR_006247556.1 other upstream 266540 12312575 ~ 12312648 (-) True LOC122327023

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038858 False 1377 lncRNA 0.39 5 NC_007132.7 33058625 ~ 33090204 (-)
grasscarp (Ctenopharyngodon idella) TU46441 False 408 lncRNA 0.35 1 CI01000006 657702 ~ 658109 (+)