rbm22 (rbm22,LOC107689188,LOC107685490,LOC107590066,LOC107748105)


Basic Information

Item Value
gene id rbm22
gene name rbm22,LOC107689188,LOC107685490,LOC107590066,LOC107748105
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12075451 ~ 12079572 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222011.1
ACACTAAGCGGCGCTGTGACTCCTTCCGAGGCCTATAGACGCAATGTATTGTGGGTAAGGGTTCTGTTCGCGCTAGCCTGTAGCAATGGCGACGTCTTTAGGCTCCAACACTTACAACAGACAAAACTGGGAAGATTCGGATTTTCCCATACTCTGCCAAACATGTTTGGGAGAAAACCCTTACATCCGGATGACCAAAGAGAAATTTGGCAAGGAGTGCAAGATCTGCGCGCGTCCCTTCACGGTTTTCCGCTGGTGTCCTGGAGTCAGGATGCGCTTTAAGAAGACGGAAGTGTGTCAGACCtgcagtaaaatgaaaaatgtctgtCAAACCTGCCTTTTGGATCTGGAATACGgTTTGCCCATTCAGGTTCGTGATACTGGGCTGTCCGTTAAAGATGAAGTACCCAGATCAGATGTGAATAAGGAGTATTACACTCAGAATATGGAGAGAGAGATTGCTAATTCTGATGGCACAAGACCTGTGGGGCTGCTTGGGAAGGCACCGAGCAGCAGTGATATGCTGCTAAAACTGGCTCGTACCACACCATATTACAAGAGGAACAGACCACACATCTGTTCCTTCTGGGTGAAGGGGGAGTGCAAGAGAGGTGAAGAATGTCCGTACAGGCATGAGAAGCCCACTGATCCAGATGACCCACTGGCTGATCAGAACATTAAGGACCGTTACTATGGCATTAATGATCCTGTGGCTAACAAACTCCTGATGCGGGCCTCCTCCATGCCCAGACTGGACACACCGGAAGACAAGTCCATCACCACACTCTACATCGGAGGGCTGGGAGAAGACGTTACAGACTCTGAGCTCAGgAACCATTTTTACCAGTTTGGGGAGATTCGTACCATCACCATCGTTCAAAGGCAGCAGTGTGCTTTCATTCAGTTCGCTACACGGCAGGCTGCTGAGACGGCTGCAGAGAAGTCTTTTAATAAACTCATTATTAATGGACGTCGACTTAACGTAAAATGGGGCAGGTCACAAGCGGCTCGAGGAAAAGAGAAGGATGGGGTGACGGAGAGCGGAATCAGGCTGGAGCCAGTGCCCGGCCTCCCTGGTGCTCTGCCCCCACCTCCTGTGTCTGATGAAGATGCCTCCACCAACTACTTCAACCTGGCTCCCACCAGCTCCCCTGCTGTCATGAACCTGGGACTTCCTCCTCCACCTGGAGTCGCCATGCCCCCACCTCCTGGTTTTGGTCCTCCTATGTTCCACACCATGGATCCCATGGCCCCGCCGATGCCCCCTCCAATGGCCATGAGGCCACCCGGACAGGTCCACTACCCATCCCAGGATCCTCAGCGGATGGGCGCCCATGCAAGTCGCCACGGAGGCCCTTAGATGGTTATACAGCTACCTCACTGTCCAGCAATGACCGCTGAACAACTGAACCCAGAGTGATGTCACCTATGCCCACAAAAGTGTTTATATCTGTCAATCATTTTCAGAGTAAGCGCAAGATGGAATGCATAATGAAAATATTGGTAAAATACCAGCATTTTAGGATTTGAACCATgacaaaacttttgttttttaacttttgatTTGTAAAAACCCTTAATGGTTTGATatgtttttgtcaattttgtATGTAATGTTATGAAACAGACATCATCCTTTTTTTAGGGCCGAATGACAAAGAATTGGTTGCAGTGACCAACAATTACCAAGTGGGGGCACTATCGACTATTTCATGCACCTGaagtctttatttgtttatgagGCTTTATTGTCCTACACCTCTAGAATATTCCAAGATTCATATTACAGTACTTATTACAGCTAGTGTCCATTTCTTCCCCTTTTCTGTAAAGTATGAAGCGTGTTGTCCTGAAttgtttttaagactttttttgttcttgaatGTACAGCTGTCTAGTTTGTGGTTACATTAAAGAAGCTTCACATTTTGAAA

Function

symbol description
rbm22 Predicted to enable U6 snRNA binding activity and pre-mRNA binding activity. Acts upstream of or within chordate embryonic development. Located in nucleus. Orthologous to human RBM22 (RNA binding motif protein 22).

NR:

description
PREDICTED: pre-mRNA-splicing factor RBM22

GO:

id name namespace
GO:0033120 positive regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0009790 embryo development biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017069 snRNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222011.1 True 1934 mRNA 0.47 11 12075451 12079572

Neighbor

gene id symbol gene type direction distance location
slc34a1b LOC107748116,LOC107588795,LOC107685502 coding downstream 39056 12026517 ~ 12036395 (-)
adamts2a adamts2,LOC107689184,LOC107756799,LOC107667595,LOC107566216,LOC107590100,LOC107749938 coding downstream 121421 11896253 ~ 11954030 (-)
si:dkeyp-72g9.4 si:dkeyp-72g9.4,LOC107689183,LOC107756801,LOC107749913,LOC107566215,LOC107590060,LOC107667601 coding downstream 186592 11883367 ~ 11888859 (-)
kiaa1191 kiaa1191,zgc:123105,LOC107689181,LOC107756802,LOC107749914 coding downstream 194198 11873428 ~ 11881253 (-)
gfpt2 gfpt2,LOC107756803,LOC107590059,LOC107749915,LOC107667598,LOC107566211 coding downstream 208459 11851510 ~ 11866992 (-)
trnac-gca_120 NA coding upstream 105958 12185530 ~ 12185601 (-)
ccdc82 ccdc82,LOC107590081,LOC107689195,LOC107721402,LOC107748113,LOC107588764,LOC107685481 coding upstream 108351 12187923 ~ 12192887 (-)
LOC122326744 spag16,LOC107590107,LOC107685498,LOC107748120 coding upstream 116218 12195790 ~ 12197893 (-)
pdk3b LOC107588762,LOC107590079,LOC107685479,LOC108431348,LOC108278474 coding upstream 149106 12228678 ~ 12236185 (-)
LOC122326656 LOC107689200,LOC107590078,LOC107721414 coding upstream 183092 12262664 ~ 12267061 (-)
G145781 adra2db,LOC107566213,LOC107667592,LOC107756796,LOC107590063,LOC107689214,LOC107749943 non-coding downstream 77175 11994548 ~ 11998276 (-)
G145708 LOC107667428,LOC107756812,LOC107590098,LOC107673825 non-coding downstream 539905 11532458 ~ 11535546 (-)
G145666 NA non-coding downstream 938920 11135914 ~ 11136531 (-)
G145657 NA non-coding downstream 968085 11105913 ~ 11107366 (-)
G145559 NA non-coding downstream 1147964 10923433 ~ 10927487 (-)
G145821 NA non-coding upstream 55775 12135347 ~ 12149436 (-)
G145831 NA non-coding upstream 72231 12151803 ~ 12154754 (-)
G145829 LOC107590069,LOC107689193 non-coding upstream 75758 12155330 ~ 12157944 (-)
G145835 NA non-coding upstream 97731 12177303 ~ 12179045 (-)
G145837 LOC107590070,LOC107721412,LOC107685485,LOC107588766,LOC107689194 non-coding upstream 100946 12180518 ~ 12184069 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other downstream 17844 12012211 ~ 12057607 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other downstream 90379 11972216 ~ 11985072 (-)
LOC122326065 clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918 other downstream 262868 11806824 ~ 11812583 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other downstream 1127083 10911230 ~ 10948368 (-)
LOC122326213 NA other downstream 1218023 10854666 ~ 10857428 (-)
LOC122326615 LOC101885612 other upstream 79100 12158672 ~ 12161667 (-)
G145910 NA other upstream 295274 12374846 ~ 12375545 (-)
LOC122326748 LOC107739910 other upstream 402641 12482213 ~ 12483164 (-)
G146159 NA other upstream 1003552 13083124 ~ 13083494 (-)
LOC122326016 NA other upstream 1020544 13100116 ~ 13101521 (-)

Expression


Co-expression Network