RNA id: XM_043221996.1


Basic Information

Item Value
RNA id XM_043221996.1
length 5644
RNA type mRNA
GC content 0.46
exon number 21
gene id adamts2a
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 11896253 ~ 11954030 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtggttTAGGGTAAGGATTTGAGTGAGGCgctgaactttgcaggacagtcgaTCACCAGGAGCAGAACTGGGAACCCCTGGTTTAGGGCGGGGATGATCCGTACAGGTCAAGAGGAGTTTTTTATCGAGCCACTGGAGAGAGGAGGTGACATGACAGGAGAGGAGGAAGGAGGACCCGGGCGTCATCACATCGTCTACCGCTCCTCTGACATCAAGAAGCCGGTCGTCAATCAACCCGCTGACTTTCACCCCAGAGgttcGCCCCTGGGTCTTCAGGCTGGATTGGAGTATTTACCACACcatgttaagaaaaaaataaagagcaaCACTCGAACACGCAGAGAGACGTATGAAGATGAGATCTTTAACATCGAGGTTCTCTTGGGAGTGGACTGCTCCGTGGTGATGTTTCACGGCAGAGAGCACATCCAGAAGTACCTCCTGACCCTCATGAACATTGTGAATGGGATTTATCAGGACAGTTCCCTGGGTGCCCATATTAATGTTGTCCTGGTTAGAATCATGATGCTCTGCTCCTCCAAGTCCATGGGTTTGATTGAACTGGGCAACGCTTCTCAGAGCCTGGAGAATGTCTGCCGTTGGGCCTTTCTGCAGCAAAAAGAGGACAAGAATGATGCAGAATACCATGATCATGCTATTTTCCTCACCCGACAAGAATTTGGGCCCACTGGCATGCAAGGTTATGCTCCTGTAACGGGAATGTGTCACCCTGTGAGAAGTTGCACTTTGAACCATGAAGATGGCTTCTCGTCTGCTTTTGTTGTGGCCCATGAGACAGGACATGTtCTAGGGATGGAGCACGATGGCCAGGCAAATGAGTGTGGGGATGAGGTTCCCATGGGGAGTATAATGGCTCCTCTGGTTCAAGCAGCCTTCCACCGCTTTCACTGGTCCCGATGCAGTCAGCAGGAGCTCAGGCGATACCTCAATACATATGACTGTCTGCGTGACGACCCCTTCGATCATGAATGGCCAACTCTGCCCCAGCTGCCTGGTATGCATTACTCTATGAATGACCAGTGCCGCTTTGACTTCGGCATGGGCTACATGATGTGCACTGCGTACAGCACCTACGATCCTTGCAAGCAGTTGTGGTGCAGCCACCCCGAGAACCCTTTCTTCTGCAAAACCAAGAAGGGCCCTCCTATCGACGGGACCAAGTGTGCAACAGGAAAGCACTGTTTTAAGGGTCACTGTATCAAGCTGACTTCAGACATTCTTAGGCAGGATGGCCACTGGGGTCAGTGGACTAAGTTTGGCTCCTGTTCTCGTACCTGTGGTGGTGGAGTACGGTTCCGAACTCGAGAGTGTAACAACCCAATTCCGGCCAACGGGGGGCGCACATGTTATGGAAACAGCTATGAGTTCCAGCTCTGTAACACGGACGAGTGTGCAAAGGCCCTGGCTGACTTTAGAGAGGAGCAGTGCAAGATGTGGAACCCACACTTTGAGCATGAGGGCACCAAACACCATTGGCTGCCCTACGAGCACCCTGAATctgaAGAGAGATGTCAACTCTACTGCCAGTCAAAAGAAACTGGAGACGTGGTGTCCATGAAGAGAATGGTGCATGACGGCACACATTGTTCCTACAAAGACTCTTACAGCGTGTGTGTGCGAGGGGAGTGTGAGAAAGTGGGCTGTGACAATGTTATAGCCTCGGAACTAGAGGACGAtaagtgtggtgtgtgtggagGAGACAACTCTACCTGCAAGATTGTCAAAGGAAATTTTACCCGCAGCACAAGGAAACCAGGTTTTTTGAAGATCCTGGAGATTCCTAGAGGAGCACGCCACATACAGATCCGTGAATTCAAAGGAACTCCTCATATTCTAGCGGTGAAGAACCAGGCCACAGATCATATCTTCCTGAATGACGATGGTGATTTTCCAGAGTCACGTACAGTAATTGAGAAAGGCGTGGCATGGGAGTACACTAACAATGATGACATGGAGACGGTCCAGACCACCGGACCACTCAAATATGGAGTTCTCATCATGGTCCAGTCTCAGAGCATTTCTAAAGTCACTCTTTCATACAAATACATCCTGCCAGAAGATCCACTCTCATCAATGGAGAACACACTGCCTCAGGACGACACAATTTACTTTGAGTGGGCTCTCAGGAAGTGGTCGCACTGCTCAAAGCCATGTGGTGGAGGGAAACAGTACACACGTTTTGGATGCCGGAGGAAGTCGGATGGCAAAATGGTACACCGCACACTCTGTGCCAACATACCCAAACCTCGCGCCATCAGCCGAGCATGCAACCAGAAGGAGTGCTCAGAACCAATATGGGTGACAGGAGAATGGGAGGAGTGCAGTAAATCATGTGGTAAGACAGGTTCTCAGACTCGACCTGTACGCTGTGTGAGACCTGAACTGGACGGTTCATACAAAGCCATCAATGCAAAGTACTGTAATGACGACCGGCCTGAAGGGCGACAACCCTGTAATCGTCACCTATGCCCTGCGCAATGGAGAACTGGACCTTGGTCTCAGtGCTCAGTGACCTGTGGTAATGGAACTCAAGAGCGGCAGGTCATGTGCAGCACCCCTGATAATGCCATCGGTGCCTGTATGGACACCAAGCCAGAGAGCATCAAACCATGTCTGCTGGCACCATGTCCAAACGACAGAGGGAACTTCCTCATCCAGTGGCTCTCCAGAGCAGACCCCGAGTTCCCAGCACCCAAGATCTCCTCAAGATCCCGCTGTAAAGGAGACAAGTCTGTGTTCTGTCGGATGGAGGTACTTAGTAAGTACTGCTCCAACCCGGGCTACAGGCAGATGTGCTGCAAGTCTTGCAACCAGAGCAACTACACCTCTGAATTCAACCTGACTAGACCCTGGATGTACACCACTATCACCCCCACCGTAACTCCCACTGCCATGGTTCGCATTCGCACGACACAGCTGTACAGGACCTCGCAGAAGCCCGACATAACAATCACGCCATCGGTCAGCAGATGGAGAAACATCAGCACCGAGCCCACATATTGGGGCTACACAACCACCGTGAACCCAATAACCCTAAAACCAGAAACAACACCCCCTTTCGCCACTGGTTCTGTCACTGTGAGCACTAAGCTTCCCAGCACACTCGATTACGAAGAAGAAACAAGCGCCCCCTTCTATGAAGACGAAACCTGGAGCGACGTCTCGGACGAATTCTTTTCAGAATCCGAATCGTCAGAGTTCATCTCATCGTCTGCAGAGCCTTGGCCAACAACGCCTGAGAATAAAAACATCGAGACAACTTTTTTGACAACGCTACCACCTAACATTACTGCAACAACAAGCACTCCTGCCATAATCAGTCTCCATCGGTCAGAAGACAAGAAGGAGAATAACTCCATCGACGTGTCCTACAGGATTGTCAATCCGAacgaggtcacacttaaccactTTGTCCCCAGAAAGCGAGTGCCGTTCCGTGAGAAAACGCATAATAAAAGAATTCAAGAGCTCCTTGCAGAGAAAAGACGACAAGACTTCCTGCTTCAAAGACTGAAACGAAAACCAGGAGACTGAtacatttccttttctttatccCTGTGGTATTTTGTGAGTGGTTTTACGGCCTCTACACTCTTTTTTGgcatttgcaatatttttacagGAAATAACCTCAGATCTCAGTCTTTCATGTAGTATCTGTTCAAGGCATCTGATCGGATAGAAAAATGACCCTAGTCAAGTCTtctctcattttttatttttttttgaaggtgaGATTGTCCCGGTGATTTAAGGCTAGTTTAAAAACACAAGGGGTATCTGTTGTGAAGATCTGCCAGTTTAAGCTTCAATCAGGCACATACTGTATGATTTTTCCAGCCCTCTGTGATTGTTGAAAATGATCCCTGTGAGATCTTGAGTAAAAGTCATGGCACACAGTGTGAGGTCAACAGTCAGACTGTACAATACACATCCACAATTTTGATCCCAGTGGTGATGTTACAAGCATATACAAGCTGTGCAACAAAATGTCACTCACCGCCGGAACCTTTAAGGCTGAGAATCATGGTGAAATCTGCAGGTGTATACACATCAAGCAAAGACCTCATATTGTGCTTTACAGAAATTTTACAATGCTAAAATTTGTCTTAGGTGGCAAAACTCTACAGTTTGAACCTGACTTAAAGCTTGCTGAATTAAGACATCCACAAATCATATATTGTCTCAATTGTCTCAAAAAGGTTTATTGACCCAGctgaaaactaaattaaatcagcTTAAGATGGATTTAGATTAGTTTTGGTGAGCTGGTGAGGCTGACAGACCAGCTAAACCAGATAAATACCATCCTGACCAGAATAGAAGACCAGCTAAACCAGCCCAAACAAGACTAGCTAAATCACCGGTTCAGTGCTTTTTTCTTGAGAAGAATGATATTTCAACATTTGGTTTATCTTGTCTAAAGTTTTAAGTCAACTAACCTCCACtgcattacagtatatatagagCACAAGCGACCCTTATTAAAATGAACCATgatttaaacacaaataataccATGGTTACTACAGTTAAGCCAAGATTGCCACAAATTAACTACACTAAGCATAGTTTAATCATTGTATTTGTTAACTGAAAATTGAAAACTGTGgttatacaaatacaaatcaactctccaaaaaacatggttaatgcacttttactacaataaaaccaTGCTTAATTTTTTCTTGTGTAAAGATGCAGTCACTTGTGAAACTTAGTCTACTTTTGTGGGCAAAACGGTCCATTGTCCTGACAAGGTCTTTCATAATTTTCTGGTCCTTGACAGTGTTTCCCGGCAGTCAACGGGACACAAACCTCCtgtttttcatccaaaatgtctAAATTGTGTTAATGGGTTCGAAACAACATGGGGgattaataacaaattaataacagagttttcattttaagggTAACCCTTTAAAAGTGACTGCACCTCAAATCTTGATACTACAAACCTTATGTTGAAAAATCATGCTCCTCTGGCTCTTAATGTgttcagaaatatttatattctgctAAACGAACAAATGTAAAACGGCTAGCTGCAGCATAATGGAATGTAAACTACTTCTAACTTGAGCAAAATGCTGAATAAACAGCAAGATGCATCGCAGCAGGCAGAAGTGTCGCAATGTttcaaagggggaaaaaaaaaaacacagatggaCACAAGTGCGAACGGCCCGTTCGGATGACTGCTGTGAGATTGCTGGTCATCTCGTgacattttgaaacaaaacattaattctGTAACCACGTGACTATTTCTTGCAAACACTTATCTGGCTTCTCTCTTAATAAATGCACAGATCTAAATCCCTTCGTAAATGTTGTAAATAtgaattagaatttattttttgtatttattgaagTACCTGTGCTTTCTCCCAAAGCCGTTTTGTGTTCATCAGACCACTTTTTTGTGCATGCGGCATGAGTGACAATCCTTCACATATCCAAGAGCCAATACTATGATATCTCCTCTACATTGTCCGAGCGCTGTATTGAGAAATcagtgtatattaaaaatgcaacagaCCTCTGCATTCCTCGTACAAGTGGACATCTACATTCTTGATTCCTCACATTCTTCACTTAATAAAGCTGCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215255 lncRNA downstream 360707 11532458 ~ 11535546 (-) True G145708
TU215203 lncRNA downstream 759722 11135914 ~ 11136531 (-) True G145666
TU215192 lncRNA downstream 788887 11105913 ~ 11107366 (-) True G145657
TU215026 lncRNA downstream 947975 10946952 ~ 10948278 (-) False si:dkey-22f5.9
TU215030 lncRNA downstream 968766 10923433 ~ 10927487 (-) True G145559
TU215359 lncRNA upstream 23487 11972216 ~ 11974441 (-) False cnot6a
TU215363 lncRNA upstream 45819 11994548 ~ 11998276 (-) True G145781
TU215377 lncRNA upstream 63482 12012211 ~ 12046035 (-) False rgs14b
TU215376 lncRNA upstream 91081 12039810 ~ 12046035 (-) False rgs14b
TU215379 lncRNA upstream 91081 12039810 ~ 12046035 (-) False rgs14b
XM_043221953.1 mRNA downstream 7394 11883367 ~ 11888859 (-) True si:dkeyp-72g9.4
XM_043221954.1 mRNA downstream 7411 11883367 ~ 11888842 (-) False si:dkeyp-72g9.4
XM_043221823.1 mRNA downstream 15000 11873428 ~ 11881253 (-) False kiaa1191
XM_043221821.1 mRNA downstream 15000 11873428 ~ 11881253 (-) True kiaa1191
XM_043221822.1 mRNA downstream 15492 11873428 ~ 11880761 (-) False kiaa1191
XM_043221829.1 mRNA upstream 24384 11973113 ~ 11985072 (-) True cnot6a
XM_043220772.1 mRNA upstream 77788 12026517 ~ 12036395 (-) False slc34a1b
XM_043220771.1 mRNA upstream 77788 12026517 ~ 12036395 (-) False slc34a1b
XM_043220770.1 mRNA upstream 77788 12026517 ~ 12036395 (-) True slc34a1b
XM_043222147.1 mRNA upstream 91114 12039843 ~ 12057607 (-) False rgs14b
TU215321 other downstream 83670 11807360 ~ 11812583 (-) True LOC122326065
TU215322 other downstream 83670 11807360 ~ 11812583 (-) False LOC122326065
TU215325 other downstream 83670 11809664 ~ 11812583 (-) False LOC122326065
unassigned_transcript_2531 other downstream 348730 11547451 ~ 11547523 (-) True trnav-cac_11
unassigned_transcript_2530 other downstream 349222 11546959 ~ 11547031 (-) True trnav-aac_28
TU215439 other upstream 209943 12158672 ~ 12161580 (-) False LOC122326615
unassigned_transcript_2532 other upstream 236801 12185530 ~ 12185601 (-) True trnac-gca_120
XR_006247554.1 other upstream 363401 12312130 ~ 12312203 (-) True LOC122327021
XR_006247555.1 other upstream 363624 12312353 ~ 12312426 (-) True LOC122327022
XR_006247556.1 other upstream 363846 12312575 ~ 12312648 (-) True LOC122327023

Expression Profile