G145879


Basic Information

Item Value
gene id G145879
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12244159 ~ 12318262 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU215503
GAGGCGAAAACGGACGTCCTTTCTGTTCTGAAGCAGCGGTGGATACACGTGTGTTCAGAAAAAGCGGCTATTTGCTGGTGTTTTCCGAGGGATTCGCACATTTTATGGTGTTTTCCGAGGGATTCGCACTTTTTATGGTGTTTTCCGAGGGATTCGCACATTTTTATGATTACGCTAAAGGAGCTTTGGACCGCTTTATCCTTAACCTTCAAGCTTGAACTGCTATGTCCTATGCATTGTTTGCTTAAGTGTATTATTGTAGTTTAAGTCTTATTAAAagttttgttcaaatgtaaaaaaaaaaaaaaaaaaaaaaaa
>TU215505
GGCAGTTCCCAGTCCTGTTCCCAGGCCTGTCGTAGCAGTTTTGTTCCCAAAGAGACCTCCACCAGTACCAGTTGCACCAAATCCTTAAATACACCAACATTTGAGAAGAAATATATCAGAATTTCTAGTGCACACTACTGCTCATCACTTTCtttaccaaaaacaaaatatgattaCAGCAAATACTAGTCAGCGTTAAGATCATACAATTTTATTGCTAAAGGCTTACCAAAGgttgatgtgtttgtgttagtCCCTAGAGTAAGTGTAGGCTTATTTGCAAACAGACCAGTGCCTGTTCCAAAAGAGGGTGCGCTAGTGGTGGTGGCACCAAATCCAGCAGGCTTATTACCAAAAAGATTCtgtgaaaaaagaaattcaggtataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaa
>TU215506
GAGGCGAAAACGGACGTCCTTTCTGTTCTGAAGCAGCGGTGGATACACGTGTGTTCAGAAAAAGCGGCTATTTGCTGGTAAGAAACAAAGTACGCATTCtattagtaatatttctttCCATAACGTGTGGTGATGAAGCCTAAACTGAAATAGCTGGAATTACCGTCAGATGGTTCAGTGGCGATGATTAGTTTTCTGAGCACACTAAATGTATAACCAGTATTTTAAGATCTATGTGAGCTGTTCCTTAACAATATCTGTCTTCGTAGGTGTTTTCCGAGGGATTCGCACATTTTATGGTGAGTTCTGAAGAGACGttgctacttttttttaaaatattaaaccagtTCACTATGATGAAACCTAAACTTAAATAGCTGGAATTACCGTCAGATGGATCAGTGGCGATGATCGGTTTTCTGAGCACACTAACTGTATAACCAGTATTTTAAGATCTATGTGAGCTGTTCCTTAACAATATCTGTCTTCGTAGGTGTTTTCCGAGGGATTCGCACTTTTTATGGTGAGTTCTGAAGAGACGTtgctacttttttaaaatattaaaccagtTCACTATGATGAAACCTAAACTTAAATAGCTGGAATTACCGTCAGATGGATCAGTGGCGATGATCGGTTTTCTGAGCACACTAACTGTATAACCAGTATTTTAAGATCTATGTGAGCTGTTCCTTAACAATATCTGTCTTCGTAGGTGTTTTCCGAGGGATTCGCACATTTTTATGATTACGCTAAAGGAGCTTTGGACCGCTTTATCCTTAACCTTCAAGCTTGAACTGCTATGTCCTATGCATTGTTTGCTTAAGTGTATTATTGTAGTTTAAGTCTTATTAAAagttttgttcaaatgtaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU215503 False 318 lncRNA 0.38 6 12244159 12312999
TU215505 False 458 lncRNA 0.34 2 12244159 12318262
TU215506 True 896 lncRNA 0.37 3 12244159 12312999

Neighbor

gene id symbol gene type direction distance location
pdk3b LOC107588762,LOC107590079,LOC107685479,LOC108431348,LOC108278474 coding downstream 7974 12228678 ~ 12236185 (-)
LOC122326744 spag16,LOC107590107,LOC107685498,LOC107748120 coding downstream 46266 12195790 ~ 12197893 (-)
ccdc82 ccdc82,LOC107590081,LOC107689195,LOC107721402,LOC107748113,LOC107588764,LOC107685481 coding downstream 51272 12187923 ~ 12192887 (-)
trnac-gca_120 NA coding downstream 58558 12185530 ~ 12185601 (-)
rbm22 rbm22,LOC107689188,LOC107685490,LOC107590066,LOC107748105 coding downstream 164587 12075451 ~ 12079572 (-)
LOC122326761 or115-7,LOC107739910 coding upstream 25999 12344261 ~ 12345202 (-)
LOC122326762 si:ch211-218m3.18,or115-2,or115-7,si:ch211-218m3.9,LOC107739910 coding upstream 39104 12357366 ~ 12358304 (-)
LOC122326760 si:ch211-218m3.18,or115-2,or115-6,LOC107739910,LOC107655715 coding upstream 46714 12364976 ~ 12368346 (-)
LOC122326751 or115-5,LOC107655716 coding upstream 67262 12385524 ~ 12387888 (-)
LOC122326006 LOC107655719 coding upstream 85005 12403267 ~ 12404193 (-)
G145881 NA non-coding downstream 20579 12218058 ~ 12223580 (-)
G145874 NA non-coding downstream 50747 12193086 ~ 12193412 (-)
G145837 LOC107590070,LOC107721412,LOC107685485,LOC107588766,LOC107689194 non-coding downstream 60090 12180518 ~ 12184069 (-)
G145835 NA non-coding downstream 65114 12177303 ~ 12179045 (-)
G145829 LOC107590069,LOC107689193 non-coding downstream 86215 12155330 ~ 12157944 (-)
G145911 NA non-coding upstream 89371 12407633 ~ 12408094 (-)
G145913 NA non-coding upstream 92905 12411167 ~ 12411433 (-)
G145922 NA non-coding upstream 99895 12418157 ~ 12418504 (-)
G145940 NA non-coding upstream 133838 12452100 ~ 12452655 (-)
LOC122326778 NA non-coding upstream 137746 12456008 ~ 12458270 (-)
LOC122326615 LOC101885612 other downstream 82492 12158672 ~ 12161667 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other downstream 186552 12012211 ~ 12057607 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other downstream 259087 11972216 ~ 11985072 (-)
LOC122326065 clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918 other downstream 431576 11806824 ~ 11812583 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other downstream 1295791 10911230 ~ 10948368 (-)
G145910 NA other upstream 56584 12374846 ~ 12375545 (-)
LOC122326748 LOC107739910 other upstream 163951 12482213 ~ 12483164 (-)
G146159 NA other upstream 764862 13083124 ~ 13083494 (-)
LOC122326016 NA other upstream 781854 13100116 ~ 13101521 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 1548153 13866415 ~ 13867643 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G42232 NA non-coding CI01000006 null 251347 ~ 252183 (-)