G42232


Basic Information

Item Value
gene id G42232
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 251347 ~ 252183 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47929
TTTGAGATTTCTTCGAGTCACAATAATACAAAACATACAAATATGAAATTCACAAAAAGAAAAAAAAAAAAAAAAAAAGTGCTGAAAGTCCAAAGCTGAAGTCATCTCAATCCCCTTCATTTGAAATCTGGTGGGCAAAAAACAAAAAAGATTTACATCACTTGCAGGCCATTTTTTACAAAATGTGAAACACGTTTGGTTTCATGTCAGAAAACCTTAAATCACCACTGATCAATCTGACGGTAATTCCAGCTATAAATCAGTTTAAGTTTCATCATAATGAGCTCGGCCAGCATTTAAATGTATTTAAATTCCTTTTAAATTCCTTCAGAACTCACCGTAAATTTGTGAAGCCCTCGTAAGAGATCTGTAAAGACAGACAGATTGTTAAGGAACAGATCATACATGTGGATAAATAATCAGTCCACATTTAGTGTGCTCAGAAAACCAATAATCACCACTGATAAATCTGACGGTAATTCCAGCTATAATCAGTTTAGGTTTCATCATAGTAATGAACTCGGGCAGTGTTTAAATAACAGCATTCCTGCAGAACTCACCGTAAATTTGTGAAGCCACCGAAAAAGATCTGAAAAGACATACAGATTGTTAAGGAACGGATCATACATTTGATAAGTACTTAGTCCACATTTAGTGTGCTCAGAAAACCGATTATCACCACTGAACCATCTGACGGTAATTCCAGCTATTTTCAGTTTAGATTTCATCACAACACAGTACGGAAGTAAATTATTATTGTGAAACTGGGTACATTCTGTCTTACCATAAATCAGTCGTATATTTTATCGAAACTTCTCTGAATGCATATTTCTCGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU47929 True 837 lncRNA 0.34 1 251347 252183

Neighbor

gene id symbol gene type direction distance location
CI01000006_00230362_00248968 NUP98 coding downstream 2379 230218 ~ 248968 (-)
CI01000006_00218046_00225384 NA coding downstream 25963 217941 ~ 225384 (-)
CI01000006_00197068_00198895 OR101-1 coding downstream 52305 197045 ~ 199042 (-)
CI01000006_00066309_00066605 NA coding downstream 184717 66055 ~ 66630 (-)
CI01000006_00057579_00058098 NA coding downstream 191655 57411 ~ 59692 (-)
CI01000006_00252918_00257418 NA coding upstream 527 252710 ~ 258244 (-)
CI01000006_00322618_00342919 TAOK1B, TAOK1 coding upstream 70092 322275 ~ 342919 (-)
CI01000006_00375127_00380820 PCYT1BA, PCYT1BB, PCYT1B coding upstream 122707 374890 ~ 380957 (-)
CI01000006_00414003_00416701 ARXB coding upstream 161322 413505 ~ 416701 (-)
CI01000006_00431032_00484050 APBB3 coding upstream 178782 430965 ~ 484486 (-)
G40717 NA non-coding downstream 164558 86590 ~ 86789 (-)
G40708 NA non-coding downstream 173763 77343 ~ 77584 (-)
G40703 NA non-coding downstream 176863 74224 ~ 74484 (-)
G40677 NA non-coding downstream 223916 27222 ~ 27431 (-)
G42237 NA non-coding upstream 41752 293935 ~ 294309 (-)
G42268 NA non-coding upstream 42400 294583 ~ 294785 (-)
G42269 NA non-coding upstream 43208 295391 ~ 295721 (-)
G42270 NA non-coding upstream 43622 295805 ~ 296092 (-)
G42271 NA non-coding upstream 44291 296474 ~ 296675 (-)
G42285 NA other upstream 103630 355813 ~ 356139 (-)
G42692 NA other upstream 1533318 1785501 ~ 1788634 (-)
G42667 NA other upstream 1636805 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 2032649 2284994 ~ 2296494 (-)
G42934 NA other upstream 2316730 2523776 ~ 2582206 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019144 CR847523.2 non-coding NC_007132.7 CM002905.2 40400714 ~ 40400788 (+)
tiger barb (Puntius tetrazona) G145879 NA non-coding NC_056719.1 CM032088.1 12244159 ~ 12318262 (-)