RNA id: TU215552


Basic Information

Item Value
RNA id TU215552
length 462
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G145911
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12407633 ~ 12408094 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaactaaacaagaGCTTCTTGTCACATATGAGCACATAGGCAGATTTATTAAACTGCTGCTACTGCTGTTTGCGGTGTCAAATTACGCTGTGCGCGCTATACTCATGTAATGCCGATCAGGGACCGATTCAATATTTACATCAGTACACAACAAGCGAtactttatacaaataaattatatatattgattGCGAACAATCGAATGACGTGTCAAATGTCTAAGAATTACCgctattgcatttataatgacGCAATCGTAATAACGCAATCTGAGGTAGAATAAACTGAATTACGTTATAACACACTCTGAAACACATCTACAATGATAACAAATATTGTTACTTACGGAATTATCAACGCACAACAATACCAAACAATAGAAAAcagactttaaagaaaaaccaaagcCAGGGAGCTCCGTATTAATCCTCTATTCTAGATGCTGCCGAACTCAAACTTCTT

Function

GO:

id name namespace
GO:0043254 regulation of protein-containing complex assembly biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0044089 positive regulation of cellular component biogenesis biological_process
GO:0051128 regulation of cellular component organization biological_process
GO:0051130 positive regulation of cellular component organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0010638 positive regulation of organelle organization biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0065008 regulation of biological quality biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:1902905 positive regulation of supramolecular fiber organization biological_process
GO:0090066 regulation of anatomical structure size biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0051495 positive regulation of cytoskeleton organization biological_process
GO:0006996 organelle organization biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0030029 actin filament-based process biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0045010 actin nucleation biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0032271 regulation of protein polymerization biological_process
GO:0032273 positive regulation of protein polymerization biological_process
GO:0016043 cellular component organization biological_process

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05100 Bacterial invasion of epithelial cells

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215505 lncRNA downstream 89371 12244159 ~ 12318262 (-) False G145879
TU215545 lncRNA downstream 90639 12316295 ~ 12316994 (-) True G145905
XR_006247452.1 lncRNA downstream 94489 12311922 ~ 12313144 (-) True LOC122326242
TU215503 lncRNA downstream 94634 12244159 ~ 12312999 (-) False G145879
TU215506 lncRNA downstream 94634 12244159 ~ 12312999 (-) True G145879
TU215554 lncRNA upstream 3073 12411167 ~ 12411433 (-) True G145913
TU215563 lncRNA upstream 10063 12418157 ~ 12418504 (-) True G145922
TU215581 lncRNA upstream 44006 12452100 ~ 12452655 (-) True G145940
XR_006247508.1 lncRNA upstream 47914 12456008 ~ 12458270 (-) True LOC122326778
TU215586 lncRNA upstream 74119 12482213 ~ 12482418 (-) False LOC122326748
XM_043220679.1 mRNA downstream 3440 12403267 ~ 12404193 (-) True LOC122326006
XM_043221886.1 mRNA downstream 19745 12385524 ~ 12387888 (-) False LOC122326751
XM_043221885.1 mRNA downstream 19745 12386743 ~ 12387888 (-) True LOC122326751
XM_043221896.1 mRNA downstream 39287 12364976 ~ 12368346 (-) True LOC122326760
XM_043221897.1 mRNA downstream 39287 12367405 ~ 12368346 (-) False LOC122326760
XM_043220884.1 mRNA upstream 5874 12413968 ~ 12417703 (-) True LOC122326168
XM_043220885.1 mRNA upstream 10860 12418954 ~ 12422124 (-) True LOC122326169
XM_043220975.1 mRNA upstream 17087 12425181 ~ 12427422 (-) True LOC122326246
XM_043221883.1 mRNA upstream 74126 12482220 ~ 12483164 (-) True LOC122326748
XM_043221904.1 mRNA upstream 85990 12494084 ~ 12495022 (-) True LOC122326765
TU215551 other downstream 32088 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 94761 12312799 ~ 12312872 (-) True LOC122327024
XR_006247556.1 other downstream 94985 12312575 ~ 12312648 (-) True LOC122327023
XR_006247555.1 other downstream 95207 12312353 ~ 12312426 (-) True LOC122327022
XR_006247554.1 other downstream 95430 12312130 ~ 12312203 (-) True LOC122327021
TU215842 other upstream 675030 13083124 ~ 13083494 (-) True G146159
TU215845 other upstream 692096 13100190 ~ 13101076 (-) False LOC122326016
TU215846 other upstream 692096 13100190 ~ 13101243 (-) False LOC122326016
XR_006247558.1 other upstream 1036984 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 1458321 13866415 ~ 13867613 (-) True LOC122326201

Expression Profile