RNA id: XM_043221885.1


Basic Information

Item Value
RNA id XM_043221885.1
length 1146
RNA type mRNA
GC content 0.35
exon number 1
gene id LOC122326751
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12385524 ~ 12387888 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATACTTTGGGTACAATTATGCTCTGTTTTGCTAGAAAATCTAGCACCAGGAAAAGAAATACTGAATACTAGATAAAATACAAATAGCTGTCAGCACAGTCCATGCATATTTCTTGTAGTGAAAGGCAGACATATAAGATaagatatatttaatgaaagtaaaaagtCTGTGTTTTACTGCTCACAGGTTTTGTGTAGAGCAACTAATGGACAACCTGACATTCACAAACAACATTCTCCTTGTGGAGGGACTGAAAGTTACACCTCAGGCTTCGTATTTAGTTTTTATCTtgcttttcttgttttatgtcTTAGCAATGGGATGTAACATTGGactaataattttaattgcaatagAGAAGAACCTTCATCATCCTATGCATTTTCTGTTCTGTAACCTGCCAGTGAATGACATAATTGGGACTACTGTAATTTTACCACGCTTAATGCAGGACATTTTTAAGCAGTCCTCAGAGCGCTATATAACATATGCAGAGTGTATTATTCAAGCATATTTTGTTCACATATTTGCAACAGCAAGCCACACTGCACTAGTAACCATGGCCTATGACAGACAAGTGGCAATATGCAATCCATTGCTATACATGActataatgacaaataaaatggtGGTTACATTATCAGCATTAGCCTGGGCACTGCCTGTAATTGCAGTGGCAATTATGATAGGTCTCACTGTACGTTTGTCTCACTGCAGATCTAAAATTGAAAACCCTTTCTGTGACAATGCTTCACTTTATAAATTGTCCTGTGAAAATGTGGCCATTAATAATATGTTTGGAATCGTTTATTCTGTGGCAGGATTCAGCATATCAGTGACACTAATGCTTATAACATATATCAGGATTGCTACTGTATGTATAATTAGGAAAAACAAAGCACTCAACAGTAAAGCCATAAAAACATGTGGCAGTCAcataactgtttatttaataatgtttgtttcttgtgccatcatgattttttttcatcgtTTTCCTGAATACTCTGAAAACAGGAAGCTAGCTAGTATAATGTTTCACATTGTACCACCGGGACTAAATCCTGTAGTATATGGTTTACAAACCACAGAGATAAGACAAAGGATTGTTAAACTGTGGCggaaaaaagttaatattttgtga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215505 lncRNA downstream 68481 12244159 ~ 12318262 (-) False G145879
TU215545 lncRNA downstream 69749 12316295 ~ 12316994 (-) True G145905
XR_006247452.1 lncRNA downstream 73599 12311922 ~ 12313144 (-) True LOC122326242
TU215503 lncRNA downstream 73744 12244159 ~ 12312999 (-) False G145879
TU215506 lncRNA downstream 73744 12244159 ~ 12312999 (-) True G145879
TU215552 lncRNA upstream 19745 12407633 ~ 12408094 (-) True G145911
TU215554 lncRNA upstream 23279 12411167 ~ 12411433 (-) True G145913
TU215563 lncRNA upstream 30269 12418157 ~ 12418504 (-) True G145922
TU215581 lncRNA upstream 64212 12452100 ~ 12452655 (-) True G145940
XR_006247508.1 lncRNA upstream 68120 12456008 ~ 12458270 (-) True LOC122326778
XM_043221896.1 mRNA downstream 18397 12364976 ~ 12368346 (-) True LOC122326760
XM_043221897.1 mRNA downstream 18397 12367405 ~ 12368346 (-) False LOC122326760
XM_043221900.1 mRNA downstream 28439 12357366 ~ 12358304 (-) True LOC122326762
XM_043221899.1 mRNA downstream 41541 12344261 ~ 12345202 (-) True LOC122326761
XM_043221368.1 mRNA downstream 88971 12281617 ~ 12297772 (-) True ssh2b
XM_043220679.1 mRNA upstream 15379 12403267 ~ 12404193 (-) True LOC122326006
XM_043220884.1 mRNA upstream 26080 12413968 ~ 12417703 (-) True LOC122326168
XM_043220885.1 mRNA upstream 31066 12418954 ~ 12422124 (-) True LOC122326169
XM_043220975.1 mRNA upstream 37293 12425181 ~ 12427422 (-) True LOC122326246
XM_043221883.1 mRNA upstream 94332 12482220 ~ 12483164 (-) True LOC122326748
TU215551 other downstream 11198 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 73871 12312799 ~ 12312872 (-) True LOC122327024
XR_006247556.1 other downstream 74095 12312575 ~ 12312648 (-) True LOC122327023
XR_006247555.1 other downstream 74317 12312353 ~ 12312426 (-) True LOC122327022
XR_006247554.1 other downstream 74540 12312130 ~ 12312203 (-) True LOC122327021
TU215842 other upstream 695236 13083124 ~ 13083494 (-) True G146159
TU215845 other upstream 712302 13100190 ~ 13101076 (-) False LOC122326016
TU215846 other upstream 712302 13100190 ~ 13101243 (-) False LOC122326016
XR_006247558.1 other upstream 1057190 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 1478527 13866415 ~ 13867613 (-) True LOC122326201