G454432


Basic Information

Item Value
gene id G454432
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 479069 ~ 480597 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU521736
AGAACCACTTCAGATTTCTCTTTTTGAATTCCCAATTCAAGTGGCAGCACTATAAAGAATGTCATGAAGGGGAACTAGCATCTCAAGATGGATATTGCCAATATATAACGTTAATAATCAGATACCAGCTTTTCATTTATTCATGCACCAAAATCCTGAACTGACACAAACTTTTGATGATGGTTTATTAATGGAAATAGATATTGTTTAGCAGGTCAAATGTTTCATCATTGAATACTAAGCTTAGTGCTGCAAAAAGTTGCTTGTTTTAGAACAGTCTGTGCCCACATCCTAGAATAGTTACTGAAATACTATAGCACAGTTAGTTTGACAAATTAAATGTAATGTGTTAGTAATTCCAAGGGCATATTTGAAGACATAACAAAATTTGAGCAAAACTGGGCTTTATGACAGTGTCTCCCTCTACAGTCCACACCACAGAATACATGGTGAGCAGCATTCAGCACAAACACGTGTAGTGTTCTTTTGGAAGCCTGAAGTCCATTTACTTACCTTCATTATGTTCTAAGTGCAAATTAGTATTATTATTTTTTTTAATTGAGTGTTTTTAGAATGTTTCCTTTTGTGCGTCACAGAAGAAACTCAGTTGTAAAAGTTCTGGAACGATATGAAGGTAAGTAAACAATGACAGAATTTTGAGTTATCTGTTCCTTTAAAAGCAACTATAACAGTAAACGGATATAGTCAATACAGATGGGTGCAGACAATTATACTTTGAAACTTGAAAATGACCTAAACATAAGTATTAAAATAAATAATTAATAATGCATCACATCACAACGATTAATAAGAATGTCAATATTGATGGAATCATGTTTAGTGTAATTTGTTCAATAATACAAAAAATGCTCAATATCAGGTAAGTGCCACTGAACAGAACACACAAGCGCAGTTCCTTTAACAGCCACACAACAAATCGTGCCGTCAGCACACGTTTCTGTCAAGATTAGTAGCTAGAAGTGTGTACAGGTGTCACACCGTGCAGAGGAGGGGTCAATGAGGTCTCGGTCCAATCCTGTGCATGTGCATGCAGCAAGCAGCCAATCAGCATGTTATGCCATTAGCCTGGCATCAGCTGAGCTTTTTTTCCTGCCAGCAGAAGCCGCCCCAACAACCATCTGAGCAGCTCCCGGGGTACCCACAGTGCTCAGAGCAGCAGTGTGTCCAGAAGAGCCATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU521736 True 1200 lncRNA 0.38 2 479069 480597

Neighbor

gene id symbol gene type direction distance location
CI01000320_00442550_00456381 PTPN2B coding downstream 22682 442124 ~ 456387 (-)
CI01000320_00420198_00423170 NA coding downstream 55899 419963 ~ 423170 (-)
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding downstream 85612 388507 ~ 393457 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 129624 346199 ~ 349445 (-)
CI01000320_00331521_00343779 YWHAZ coding downstream 135290 331481 ~ 343779 (-)
CI01000320_00586900_00592523 FAM210AA coding upstream 105396 585993 ~ 592523 (-)
CI01000320_00688829_00696138 NA coding upstream 208091 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 264433 745030 ~ 759106 (-)
CI01000320_00935826_00945755 LRP12 coding upstream 453835 934432 ~ 945755 (-)
CI01000320_01042859_01043564 NA coding upstream 561427 1042024 ~ 1043564 (-)
G454442 NA non-coding downstream 46098 432453 ~ 432971 (-)
G454440 NA non-coding downstream 50988 427223 ~ 428081 (-)
G454414 NA non-coding downstream 167321 311484 ~ 311748 (-)
G454394 NA non-coding downstream 432054 46780 ~ 47015 (-)
G454387 NA non-coding downstream 442470 36399 ~ 36599 (-)
G454445 NA non-coding upstream 676 481273 ~ 481628 (-)
G454459 NA non-coding upstream 7630 488227 ~ 488473 (-)
G454460 NA non-coding upstream 7944 488541 ~ 488862 (-)
G454495 NA non-coding upstream 46680 527059 ~ 528552 (-)
G454479 NA non-coding upstream 75671 556268 ~ 556919 (-)
G454663 NA other upstream 570871 1051468 ~ 1055895 (-)
G454686 NA other upstream 660645 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 855682 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 946186 1426176 ~ 1430654 (-)

Expression


Co-expression Network