RNA id: TU521736


Basic Information

Item Value
RNA id TU521736
length 1200
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G454432
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 479069 ~ 480597 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACCACTTCAGATTTCTCTTTTTGAATTCCCAATTCAAGTGGCAGCACTATAAAGAATGTCATGAAGGGGAACTAGCATCTCAAGATGGATATTGCCAATATATAACGTTAATAATCAGATACCAGCTTTTCATTTATTCATGCACCAAAATCCTGAACTGACACAAACTTTTGATGATGGTTTATTAATGGAAATAGATATTGTTTAGCAGGTCAAATGTTTCATCATTGAATACTAAGCTTAGTGCTGCAAAAAGTTGCTTGTTTTAGAACAGTCTGTGCCCACATCCTAGAATAGTTACTGAAATACTATAGCACAGTTAGTTTGACAAATTAAATGTAATGTGTTAGTAATTCCAAGGGCATATTTGAAGACATAACAAAATTTGAGCAAAACTGGGCTTTATGACAGTGTCTCCCTCTACAGTCCACACCACAGAATACATGGTGAGCAGCATTCAGCACAAACACGTGTAGTGTTCTTTTGGAAGCCTGAAGTCCATTTACTTACCTTCATTATGTTCTAAGTGCAAATTAGTATTATTATTTTTTTTAATTGAGTGTTTTTAGAATGTTTCCTTTTGTGCGTCACAGAAGAAACTCAGTTGTAAAAGTTCTGGAACGATATGAAGGTAAGTAAACAATGACAGAATTTTGAGTTATCTGTTCCTTTAAAAGCAACTATAACAGTAAACGGATATAGTCAATACAGATGGGTGCAGACAATTATACTTTGAAACTTGAAAATGACCTAAACATAAGTATTAAAATAAATAATTAATAATGCATCACATCACAACGATTAATAAGAATGTCAATATTGATGGAATCATGTTTAGTGTAATTTGTTCAATAATACAAAAAATGCTCAATATCAGGTAAGTGCCACTGAACAGAACACACAAGCGCAGTTCCTTTAACAGCCACACAACAAATCGTGCCGTCAGCACACGTTTCTGTCAAGATTAGTAGCTAGAAGTGTGTACAGGTGTCACACCGTGCAGAGGAGGGGTCAATGAGGTCTCGGTCCAATCCTGTGCATGTGCATGCAGCAAGCAGCCAATCAGCATGTTATGCCATTAGCCTGGCATCAGCTGAGCTTTTTTTCCTGCCAGCAGAAGCCGCCCCAACAACCATCTGAGCAGCTCCCGGGGTACCCACAGTGCTCAGAGCAGCAGTGTGTCCAGAAGAGCCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521746 lncRNA downstream 46098 432453 ~ 432971 (-) True G454442
TU521744 lncRNA downstream 50988 427223 ~ 428081 (-) True G454440
TU521716 lncRNA downstream 167321 311484 ~ 311748 (-) True G454414
TU521696 lncRNA downstream 432054 46780 ~ 47015 (-) True G454394
TU521689 lncRNA downstream 442470 36399 ~ 36599 (-) True G454387
TU521749 lncRNA upstream 676 481273 ~ 481628 (-) True G454445
TU521766 lncRNA upstream 7630 488227 ~ 488473 (-) True G454459
TU521767 lncRNA upstream 7944 488541 ~ 488862 (-) True G454460
TU521813 lncRNA upstream 46680 527277 ~ 528210 (-) True G454495
TU521790 lncRNA upstream 75671 556268 ~ 556919 (-) True G454479
CI01000320_00442550_00456381.mRNA mRNA downstream 22682 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 55899 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00388838_00393457.mRNA mRNA downstream 85612 388507 ~ 393457 (-) True CI01000320_00388838_00393457
CI01000320_00346954_00349228.mRNA mRNA downstream 129624 346231 ~ 349445 (-) False CI01000320_00346954_00349228
CI01000320_00331521_00343779.mRNA mRNA downstream 135290 331481 ~ 343779 (-) True CI01000320_00331521_00343779
CI01000320_00586900_00592523.mRNA mRNA upstream 105396 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00688829_00696138.mRNA mRNA upstream 208091 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00745852_00758696.mRNA mRNA upstream 264433 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00935826_00945755.mRNA mRNA upstream 453835 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 561427 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
TU521676 other downstream 128867 350103 ~ 350202 (-) True G454374
TU521809 other upstream 46462 527059 ~ 528210 (-) False G454495
TU521811 other upstream 46462 527059 ~ 528552 (-) False G454495
TU521812 other upstream 46462 527059 ~ 528210 (-) False G454495
TU522002 other upstream 570871 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 660645 1141242 ~ 1141880 (-) True G454686

Expression Profile