RNA id: TU521790


Basic Information

Item Value
RNA id TU521790
length 632
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G454479
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 556268 ~ 556919 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCCCTGTGGCTGGGATAGGGTGCAGTTGCAGGAGCATGTGTCATTGGAGTTGGCGGCGTTGTTGTTGTTGTTGCTGGAGCTGCTGTCCGGGACCGTGATGTTTCGCATGGGGGCTCGGGGAAGTGACGGGACGGGGGGAAGAGAGCCGCCGGCCGCGGCCCTCACATGAACTGAGGAACACTTCCACAGCAGCAGCCTGCGGTCTCGGTGCACGCGCGTCTCATGCCATTCTCACGACTCTCCGACGCATTTTCTGCTTCTTGACTACGGTAAATACGTTCCCCGCATCTTGACGGTCTTTTCCTCTCGCTTTCATTCAGAAGAATGGCTTTCTGTGACGGTCTCAGGCTCACAGCCCACCTCCTCCTGCGCCTCCCTCCTCCGAGAGGGGAGCAGCTCCAGACAGACAGACAGGAGCGGTGGGAGGGGAGACTGGCGCTGACAATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGTTGCTCTACCCTCAATGGGACTGTGTGTGTAGAGACGGTTAGAATTACACACACACACTCATTAGTGCCAGCCACGACCAATCAAGGCAGGCATTGAAGAGGCTTTAACCTTGGGCTGACCCCACAGTCTAGCAGATATTCAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521813 lncRNA downstream 28058 527277 ~ 528210 (-) True G454495
TU521767 lncRNA downstream 67406 488541 ~ 488862 (-) True G454460
TU521766 lncRNA downstream 67795 488227 ~ 488473 (-) True G454459
TU521749 lncRNA downstream 74640 481273 ~ 481628 (-) True G454445
TU521736 lncRNA downstream 75671 479069 ~ 480597 (-) True G454432
TU521843 lncRNA upstream 54600 611519 ~ 612467 (-) True G454525
TU521846 lncRNA upstream 57444 614363 ~ 614572 (-) True G454528
TU521856 lncRNA upstream 69000 625919 ~ 626200 (-) True G454538
TU521864 lncRNA upstream 93297 650216 ~ 729367 (-) False G454545
TU521865 lncRNA upstream 93297 650216 ~ 667842 (-) True G454545
CI01000320_00442550_00456381.mRNA mRNA downstream 99881 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 133098 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00388838_00393457.mRNA mRNA downstream 162811 388507 ~ 393457 (-) True CI01000320_00388838_00393457
CI01000320_00346954_00349228.mRNA mRNA downstream 206823 346231 ~ 349445 (-) False CI01000320_00346954_00349228
CI01000320_00331521_00343779.mRNA mRNA downstream 212489 331481 ~ 343779 (-) True CI01000320_00331521_00343779
CI01000320_00586900_00592523.mRNA mRNA upstream 29074 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00688829_00696138.mRNA mRNA upstream 131769 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00745852_00758696.mRNA mRNA upstream 188111 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00935826_00945755.mRNA mRNA upstream 377513 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 485105 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
TU521811 other downstream 27716 527059 ~ 528552 (-) False G454495
TU521809 other downstream 28058 527059 ~ 528210 (-) False G454495
TU521812 other downstream 28058 527059 ~ 528210 (-) False G454495
TU521676 other downstream 206066 350103 ~ 350202 (-) True G454374
TU522002 other upstream 494549 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 584323 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 779360 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 869864 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 869864 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027830 True 464 mRNA 0.54 2 NC_007130.7 12583577 ~ 12615236 (+)