G454538


Basic Information

Item Value
gene id G454538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 625919 ~ 626200 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU521856
GCACACAGCTAAAATAACGAAGGAGTGGCTTCACAACAACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGACTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU521856 True 282 lncRNA 0.46 1 625919 626200

Neighbor

gene id symbol gene type direction distance location
CI01000320_00586900_00592523 FAM210AA coding downstream 33396 585993 ~ 592523 (-)
CI01000320_00442550_00456381 PTPN2B coding downstream 169532 442124 ~ 456387 (-)
CI01000320_00420198_00423170 NA coding downstream 202749 419963 ~ 423170 (-)
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding downstream 232462 388507 ~ 393457 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 276474 346199 ~ 349445 (-)
CI01000320_00688829_00696138 NA coding upstream 62488 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 118830 745030 ~ 759106 (-)
CI01000320_00935826_00945755 LRP12 coding upstream 308232 934432 ~ 945755 (-)
CI01000320_01042859_01043564 NA coding upstream 415824 1042024 ~ 1043564 (-)
CI01000320_01176457_01181900 NA coding upstream 548535 1174735 ~ 1181900 (-)
G454528 NA non-coding downstream 11347 614363 ~ 614572 (-)
G454525 NA non-coding downstream 13452 611519 ~ 612467 (-)
G454479 NA non-coding downstream 69000 556268 ~ 556919 (-)
G454495 NA non-coding downstream 97709 527059 ~ 528552 (-)
G454460 NA non-coding downstream 137057 488541 ~ 488862 (-)
G454545 NA non-coding upstream 24016 650216 ~ 729367 (-)
G454585 NA non-coding upstream 96331 722531 ~ 723677 (-)
G454586 NA non-coding upstream 96755 722955 ~ 724365 (-)
G454593 NA non-coding upstream 107258 733458 ~ 735906 (-)
G454615 NA non-coding upstream 222957 849157 ~ 867291 (-)
G454663 NA other upstream 425268 1051468 ~ 1055895 (-)
G454686 NA other upstream 515042 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 710079 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 800583 1426176 ~ 1430654 (-)
G456317 NA other upstream 3017037 3643237 ~ 3648040 (-)

Expression


Co-expression Network