RNA id: TU521865


Basic Information

Item Value
RNA id TU521865
length 190
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G454545
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 650216 ~ 729367 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGTTGGGGTAACACTGAAGCAGAGTTAAAGTTAATGAGATAATTAAGTGATTAATTAAGTTATGATTGAGCATTAGTGATGAACACCTGCTGTTAACAAGCAGAATCACTGAAGAGAAATACAATAACTACAAATGACTTCCAGCCACAGCCTTAGATGAAATCAACTGAAGATAAAAGACATTAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521856 lncRNA downstream 24016 625919 ~ 626200 (-) True G454538
TU521846 lncRNA downstream 35644 614363 ~ 614572 (-) True G454528
TU521843 lncRNA downstream 37749 611519 ~ 612467 (-) True G454525
TU521790 lncRNA downstream 93297 556268 ~ 556919 (-) True G454479
TU521813 lncRNA downstream 122006 527277 ~ 528210 (-) True G454495
TU521909 lncRNA upstream 54689 722531 ~ 723677 (-) True G454585
TU521912 lncRNA upstream 55113 722955 ~ 724365 (-) True G454586
TU521919 lncRNA upstream 65616 733458 ~ 735906 (-) True G454593
TU521942 lncRNA upstream 181315 849157 ~ 861657 (-) False G454615
TU521944 lncRNA upstream 192619 860461 ~ 867291 (-) True G454615
CI01000320_00586900_00592523.mRNA mRNA downstream 57693 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00442550_00456381.mRNA mRNA downstream 193829 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 227046 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00388838_00393457.mRNA mRNA downstream 256759 388507 ~ 393457 (-) True CI01000320_00388838_00393457
CI01000320_00346954_00349228.mRNA mRNA downstream 300771 346231 ~ 349445 (-) False CI01000320_00346954_00349228
CI01000320_00688829_00696138.mRNA mRNA upstream 20846 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00745852_00758696.mRNA mRNA upstream 77188 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00935826_00945755.mRNA mRNA upstream 266590 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 374182 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_01176457_01181900.mRNA mRNA upstream 506893 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
TU521811 other downstream 121664 527059 ~ 528552 (-) False G454495
TU521809 other downstream 122006 527059 ~ 528210 (-) False G454495
TU521812 other downstream 122006 527059 ~ 528210 (-) False G454495
TU521676 other downstream 300014 350103 ~ 350202 (-) True G454374
TU522002 other upstream 383626 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 473400 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 668437 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 758941 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 758941 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile